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I would really appreciate if you could help me find the problem that causes this error.
I will input only the last few lines of the error that have meaning, my prompt was:
`DeepWMH_predict -i ex…
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I am opening this issue to inform the integration of the EPI spinal cord segmentation 3D nnUNetv2 model into SCT. The latest trained model can be found in the `v0.2` release here: https://github.com/s…
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Let's start by saying that I really like the new feature with the region-based training. However, I do notice a significant drop in performance (CPU-side) when enabling this feature. This is especiall…
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```
running develop
/usr/lib/python3/dist-packages/setuptools/command/easy_install.py:158: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other sta…
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Here's what I'm trying to do:
1. Pre-train nnU-Net using T1 images and labels
In this case, what is the path of weights of '1'?
Or is there another way to pre-train? In order to proceed accordi…
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nnUnet is a state of the art image segmentation architecture that automatically configures hyperparameters to the GPU memory and dataset properties. I was able to obtain a major out-of-the-box organ s…
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## Problem:
When uising the command
```
nnUNetv2_predict -i nnUNet_raw/Dataset501_GutWall/imagesTs -o nnUNet_results/Dataset501_GutWall/predictions -d 501 -c 2d --save_probabilities
```
with a …
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As usual - great work with nnUNet. We were preparing a dataset for segmentation with nnUNet and ran into a training-related question.
From the paper, we know the following:
> Oversampling is imp…
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Hello, I know there are a lot of closed issues regarding the number of epochs. However, I do not find anywhere which is the command that needs to be used on the Command Prompt after you have created t…
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### What happened?
when there are multiple T1s and/or T2s, it writes the `flirt.mat` file for averaging out to the top level directory instead of under preBIBSnet. Then later has trouble finding that…