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Generating a beast xml file using beastling, I get
```
Error 130 parsing the xml input file
nullThis BEASTInterface (UpDown) has no input with name tree. Choose one of these inputs: scaleFactor,up,d…
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Without using the `--overwrite` flag
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Most computers have at least 4 cores these days, so if no threads are specified, BEAST should aim at using as many cores as is sensible for a given analysis -- small sequences should not be split, but…
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I have finished the analysing for HCV sequences using “Birth-Death skyline serial” by BEAST2. according to the manual"Birth-Death skyline (BDSKY) turorial", we can plot the results use the R script bd…
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This is what happens when I try to open the package manager using the 2.3.3 pre-release (https://github.com/CompEvol/beast2/tree/2.3.3pre):
![error](https://cloud.githubusercontent.com/assets/512538/1…
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Defining two different covarion models in my configuration file, I get
```
Error 104 parsing the xml input file
IDs should be unique. Duplicate id 'covarion_alpha.s' found
Error detected about here…
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When there are many calibrations and another prior than the Calibrated Yule Prior is used the calibrations appear to be ignored and the analysis does not start.
A warning should be produced to indica…
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User opens BEAUti 2.3.3 and tries to load a file to run SNAPP. Crashes. When running from command line the following error message is obtained:
CUDA error: "Driver not initialized" from file , line 1…
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Once you created a taxon set on the Prior panel in BEAUti. It is impossible to remove it. But it should be possible in case you added a wrong taxon in the clade for example.
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Use "read from file" to load traits, such as dates, but the 1st line of mapping seems not to be loaded, the date is set to 0.