lmaurits BEASTling issues

lmaurits / BEASTling

A linguistics-focussed command line tool for generating BEAST XML files.

BSD 2-Clause "Simplified" License

20 stars 6 forks source link

issues

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BEASTling does not clean up concept names with commas properly

#261 Anaphory opened 2 years ago
0
Binary CTMC binarised=True

#260 acraevschi opened 3 years ago
0
Merge develop into master, in preparation for deleting develop

#259 lmaurits closed 3 years ago
0
'BinaryModel' object has no attribute 'share_params'

#258 Anaphory opened 4 years ago
11
Should __distribution__ be a property of all clocks?

#257 Anaphory opened 4 years ago
0
Report could use slightly more clever templating

#256 Anaphory opened 4 years ago
0
Should base-clocks/models/priors be abstract?

#255 Anaphory opened 4 years ago
0
Document and Unify Exit Codes

#254 Anaphory opened 4 years ago
0
PyYAML, an indirect dependency, needs Python>3.4

#253 Anaphory opened 4 years ago
4
LogNormal Relaxed Clock parameterized by “variance”, is actually “stdev in log space”

#252 Anaphory opened 4 years ago
0
Make TreePrior.add_state_nodes use state instead of beastxml

#251 Anaphory opened 4 years ago
0
Clean up a fractured repository

#250 Anaphory closed 3 years ago
38
OSError: File name too long, instead of being interpreted as list

#249 Anaphory opened 5 years ago
1
Refactor models and clocks

#248 xrotwang closed 3 years ago
7
Refactored core config sections

#247 xrotwang closed 5 years ago
7
Hack BEAST XML using DOM notation?

#246 Anaphory opened 5 years ago
2
Add tests for running BEAST on data containing synonyms

#245 Anaphory closed 4 years ago
1
Remaining synonym issues

#244 Anaphory opened 5 years ago
0
Remove the dependency on clldutils

#243 xrotwang closed 5 years ago
2
Example for using attrs to model config sections

#242 xrotwang closed 5 years ago
7
Unify file handling

#241 xrotwang opened 5 years ago
2
Major refactoring

#240 xrotwang closed 5 years ago
6
Refactored beastrun_tests and validate_ids

#239 xrotwang closed 5 years ago
1
Refactor beastrun tests?

#238 lmaurits closed 5 years ago
6
ported tests to pytest

#237 xrotwang closed 5 years ago
14
log_params duplicates log entries.

#236 SimonGreenhill closed 5 years ago
1
ASR tests fail

#235 xrotwang closed 5 years ago
33
Fix some more issues with IDs

#234 Anaphory closed 5 years ago
3
"The Yule model is not particularly suitable for linguistic analyses, however it is currently the best BEAST has to offer."

#233 SimonGreenhill opened 5 years ago
7
CLDF dataset loading pains

#232 lmaurits opened 5 years ago
19
Do we want shorter alignment lines?

#231 Anaphory opened 5 years ago
3
Drop develop branch?

#230 xrotwang closed 5 years ago
10
Drop 2.7 support?

#229 Anaphory closed 5 years ago
4
Fix encoding issue in datareaders.sniffer

#228 Anaphory closed 4 years ago
8
Encoding in tutorial file

#227 Snedronningen opened 6 years ago
10
Separate tree handling out to a separate module

#226 Anaphory closed 6 years ago
2
Is handling of multiple values correct?

#225 Anaphory opened 6 years ago
2
Clocks need tests

#224 Anaphory closed 5 years ago
0
Monophyly needs tests

#223 Anaphory opened 6 years ago
0
Path sampling needs tests

#222 Anaphory opened 6 years ago
0
Geography needs tests

#221 Anaphory opened 6 years ago
1
config.prior vs. config.sample_from_prior

#220 Anaphory opened 6 years ago
0
Improve configuration testing system

#219 Anaphory opened 6 years ago
1
Extract tree and tree prior handling into separate modules

#218 Anaphory opened 6 years ago
1
Beastrun test IDs are messed up

#217 Anaphory opened 6 years ago
2
Install differently

#216 Anaphory closed 6 years ago
1
Upstream hotfix needed for … change in attrs API?

#215 Anaphory closed 6 years ago
3
Synonyms

#214 Anaphory closed 6 years ago
2
Missing data calculation tests

#213 Anaphory opened 6 years ago
0
Pseudodollo

#212 Anaphory closed 6 years ago
8