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lmaurits
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BEASTling
A linguistics-focussed command line tool for generating BEAST XML files.
BSD 2-Clause "Simplified" License
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Minor fixes
#211
Anaphory
closed
5 years ago
4
Minor fixes
#210
Anaphory
closed
5 years ago
0
exclusions is not documented for data, only for languages
#209
Anaphory
closed
5 years ago
0
Far too many changes for my own good
#208
Anaphory
closed
5 years ago
1
Add new features
#207
Anaphory
closed
5 years ago
2
Path sampling fails when there are paths in the basename
#206
Anaphory
opened
6 years ago
0
BinaryCovarion / BinaryModel: Consider where share_params and build_freq_string belong
#205
Anaphory
opened
6 years ago
1
CovarionModel: use model_config.getboolean instead of homebrew
#204
Anaphory
opened
6 years ago
0
distributions.py is a mess.
#203
Anaphory
opened
6 years ago
0
Tests necessary for 1.4
#202
Anaphory
opened
6 years ago
6
Release 1.4
#201
Anaphory
closed
6 years ago
4
It is far too easy to mistype properties.
#200
Anaphory
opened
6 years ago
13
Covarion model estimates global frequencies for all partitions.
#199
Anaphory
closed
5 years ago
1
log_all does not start logging geography
#198
Anaphory
opened
6 years ago
0
Isn't there some configparser logic for this?
#197
Anaphory
opened
6 years ago
2
When parsing a tree from file-or-string, fail earlier.
#196
Anaphory
closed
6 years ago
1
Language groups
#195
Anaphory
closed
6 years ago
1
Approximate frequencies and rounding issues
#194
Anaphory
closed
6 years ago
2
Offset tip heights lose offset
#193
Anaphory
closed
6 years ago
1
Provide a way to add priors on clock rates
#192
Anaphory
closed
6 years ago
2
Add stub for a clock with a prior on rates
#191
Anaphory
closed
6 years ago
4
Make default model weigts integers.
#190
Anaphory
closed
6 years ago
2
Not sampling branch lengths but calibrating tips
#189
Anaphory
closed
6 years ago
3
In tests: “ERROR: BeastRun with admin mk monophyletic geo geo_prior”
#188
Anaphory
closed
6 years ago
28
Model weights need to be integers, but aren't for single-value models.
#187
Anaphory
closed
6 years ago
2
Monophyly and calibration can lead to impossible starting trees
#186
Anaphory
closed
6 years ago
5
Something wrong with monophyly
#185
Anaphory
closed
6 years ago
3
Unify reconstruct_at and calibration logic
#184
Anaphory
closed
6 years ago
1
Require compatible versions for clldutils.
#183
Anaphory
closed
6 years ago
1
Fix clldutils dependency
#182
xrotwang
closed
6 years ago
3
Unify language groups/clades specifications
#181
Anaphory
opened
6 years ago
4
ASR column headers
#180
Anaphory
closed
6 years ago
1
Ascertainment correction and AncestralStateTreeLikelihood
#179
Anaphory
opened
6 years ago
1
Set AncestralStateLogger value input for better output
#178
Anaphory
closed
6 years ago
13
Write documentation on ancestral state reconstruction
#177
Anaphory
closed
6 years ago
1
Prepare ancestral state reconstruction & Cleaner reading of CLDF data
#176
Anaphory
closed
6 years ago
16
CLDF metadata-free wordlists – Cognate column?
#175
Anaphory
closed
6 years ago
3
Interaction between log_params, log_fine_probs and log_all is broken
#174
lmaurits
closed
6 years ago
1
Tidy up communication between Configuration and BaseModel re: languages
#173
lmaurits
opened
6 years ago
1
Test whether reconstruction generates the expected file types
#172
Anaphory
closed
6 years ago
4
Introduce [language_groups] config section
#171
Anaphory
closed
6 years ago
3
Support language subsampling
#170
lmaurits
closed
6 years ago
13
Repository permits pushing to development branch without testing first.
#169
Anaphory
closed
6 years ago
5
How to specify non-standard taxon sets?
#168
Anaphory
closed
6 years ago
16
Excluding languages without location data
#167
Anaphory
closed
6 years ago
7
Document rate partitioning
#166
lmaurits
closed
6 years ago
0
Add preliminary support for reading CLDF-1.0 datasets
#165
Anaphory
closed
6 years ago
7
Rearchitect BaseModel and subclasses to permit extensive sharing of SiteModels and SubstitutionModels
#164
lmaurits
opened
6 years ago
0
Use the rootHeight input on RandomTree
#163
lmaurits
closed
6 years ago
3
Revamp implementation of altered Glottolog monophyly options
#162
lmaurits
opened
6 years ago
3
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