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At commit f778d86c63943c1e94a812cb111ab6f318d914b6
e.g.
"called_variants" :{
"gyrA_S84L" :{
"R_per_cov": "100",
"S_per_cov": "0",
…
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_This issue is being filed by a script, but if you reply, I will see it._
[PackageEvaluator.jl](https://github.com/IainNZ/PackageEvaluator.jl) is a script that runs nightly. It attempts to load all J…
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When calling `citep` with a DOI either at the prompt or when knitting, I get the following error:
```
Error in ReadBib(con) : unprotect_ptr: pointer not found
Calls: ... FUN -> bib_metadata -> greyc…
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Anyone have suggestions for the manuscript title?
Currently we have: "RNeXML: Parsing and Serializing the Next Generation of Phyloinformatic Data in R", but that's not really all that informative f…
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In this example I wonder if it makes sense to return by default the taxa labels as a column in the data.frame, perhaps the first column. Not a huge deal to move row names to a column, but a bit easier…
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This question relates to how Blang is intended to be extended to different (non-abstract) factors. In particular, would Blang ship with a variety of ready-to-use factors for, say, trees in phylogeneti…
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Tree "paintings" indicating different evolutionary regimes/modes along different parts of a phylogeny are a particularly common use case for comparative phylogenetics in R.
The current 'standard' s…
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I'm intrigued by @rvosa's suggestion of showing how RNeXML can be used to document both the character data and phylogenetic data used in comparative phylogenetics, which accounts for many of the R pac…
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First, I tried the following setup in RVM:
Ruby 1.9.3p362 (2012-12-25 revision 38607) [x86_64-linux]
with the following locally installed gems:
activesupport (3.1.9)
addressable (2.3.2)
builder (3.…