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The download vocabulary is missing trailing zeros for race codes. For example, when searching for "Indonesian" - http://www.ohdsi.org/web/atlas/#/search/indonesian - code 2.1.0 is shown as "2.1.". Whe…
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While building the v2.2 vocab snapshot it was discovered that OHDSI created a new column in the drug_strength table...this will need to be updated in our DDL generation scripts.
See reference code, …
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I'm running Achilles on a PostgreSQL database where the vocabulary is in a different schema from the data. As it stands, this will fail when the Heel checks start to execute and look for the vocabular…
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Hey folks,
First off, thank you for this resource connecting the synthetic dataset to OMOP, this is very helpful for me to evaluate how OMOP can benefit my work. This has saved me a ton of time.
Bel…
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i v4 the concept table does not have domain ID
but rule_id 7 expects it
copy of error log
> DBMS:
> redshift
>
> Error:
> execute JDBC update query failed in dbSendUpdate (ERROR: column c1.domain_i…
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Per this thread:
http://forums.ohdsi.org/t/problem-with-observation-data-on-achilles-and-heracles/1050
The V5 Achilles Observation treemap script should use the domain_id = 'observation' in place of…
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for v5.0 2014-10-15
``` sql
SELECT CONCEPT_CODE, VOCABULARY_ID, DOMAIN_ID, COUNT(*)
FROM CONCEPT
WHERE INVALID_REASON IS NULL
AND VOCABULARY_ID NOT IN (
'MedDRA','SMQ','DRG'
)
AND CONCEPT_CODE NO…
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Checked in VERSION v5.0 3-Apr-2015
Some of these drugs don't get to a clinical drug. I would expect proposals like this to make sense.
**Example 1**
HCPC - `J2426-Injection, paliperidone palmitate …
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Code crashes when running exportToJson:
Error:
org.postgresql.util.PSQLException: ERROR: relation "achilles_results" does not exist
Position: 580
Due to the fact that the export SQL code is not fu…
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Now I'm trying to parse the raw-text clinical trial eligibility criteria into a structured format. I wonder is is possible to structure the eligibility criteria into a format that can be the input of …