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* Search [mailing list](http://gmod.827538.n3.nabble.com/Apollo-f815553.html) or email list ```apollo@lists.lbl.gov``` if a general setup question.
* Provide what you were doing and what you expec…
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Hello Canu team,
I'm trying to run canu to assemble a 14 MB genome with MinIon reads.
It works find for a couple of samples, but in two of them I get this:
```
-- Canu release v1.5
-- Detect…
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Hi,
I've been trying to run on my Mac (64 GB RAM 1.4 TB free on drive) Quad core Xeon) 10.12.4. I first tried to run with a small data set (200MB total) and it did ok. Then tried to run over the w…
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I've run canu-1.5 for a huge genome with (only) 25x PacBio data on a grid:
`./canu-1.5/Linux-amd64/bin/canu -correct genomeSize=huge(>10g) corErrorRate=0.02 batThreads=64 batMemory=250 maxThreads=1…
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Hi canu supporting staff,
I turned to the Q&A tutorial of canu about 'Failed to submit batch jobs', but still have problems to run my program.
What I have done is to try to set grid either useGr…
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Hi,
I am trying to run CANU 1.6 on a large genome (2.5 gb) with ~58x Sequel data. I am facing problem at correction stage.
Could figure out why it is failing repeated several times. CANU failed at …
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Hi,
I donot know why after 1-overlapper step, canu stops without giving me any error or any message for me to understand what has happened. Please help.
This is the command i used-
```
#!/bin/sh…
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Hi there,
Thank you so much for your previous help and I run Canu1.4 these days a second time.
However, it turns out an error after overlapping step, here:
```
-- Canu v1.4 (+48 commits) r8043 f09…
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Hi.
some message enhancements are needed for grid/thread/memory tuning
1)
```
-- Run 1 job concurrently using 1440 GB and 144 CPUs for stage 'meryl'.
-- Run 1 job concurrently using 144…
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I am testing using Canu with 25 Nanopore 1D reads. I am getting failure notices but I am not sure how to fix the error. Here is the code I ran:
```
#!/bin/bash
#PBS -l nodes=n03:ppn=8
#PBS -l …