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# Bug description
Running SVIM on some long read PacBio bam files, I get an error from tabix, that the resulting sequences are unsorted.
```bash
[E::hts_idx_push] Unsorted positions on sequence #1:…
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Hi, BAVARIA is a very interesting tool. But I have some confusions when I reproduce results of integrating cells from 10X Genomics and Cusanovich 2018 datasets. I tried to use and fix your code, but i…
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Create an endpoint to generate the csv needed by the data sankey diagram. Diagram [here](https://software.docs.hubmapconsortium.org/data-sankey/index.html) example csv [here](https://github.com/hubm…
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Hello, thank you for developing this package.
I would like to use CONICS in my project but I was faced with the question Can CONICS be used on data generated from a 3'- tag sequencing protocol lik…
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Would you have the code available to reproduce the benchmarking part of the paper ? Many thanks !
j-bac updated
10 months ago
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**Project:**
10x Genomics (http://software.10xgenomics.com/) has developed a technology that produces new type of long-range sequencing data called Linked-Reads. Long (>100Kb) double stranded DNA is s…
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May I ask why there is no Infercnv.observations_Dendrogram.txt result file after running infercnv?
```
infercnv_obj = infercnv::run(infercnv_obj, # inferCNV对象
cutof…
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Hi, I got following error message:
`02:20:12 [WARN] Variant at chr7:148807387 has invalid alternative characters. This record will be ignored.`
My vcf file contains following lines:
```
chr7…
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# 10x single cell data preprocessing
open web page, click ENDPOINTS, click 'Create a personal endpoint', it would ask you if you'd like download a Globus installation dmg file.
Use Globus 'Prefe…
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Hi there!
I'm interested in using celltype for data generated from 10X Genomics pipelines.
I used Seurat to read the 10X data and converted the Seurat object to SCE.
When I tried to use predict_cel…