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For instance, are we able to provide a different fasta file?
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It appears that you have used UCSC's reference hg19 instead of NCBI's GRCh37 to build your own reference. Normally this is fine, but there are differences between these builds at the chromosome MT. Fo…
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This issue is for keeping track of options for sequencing my DNA. Unfortunately, it seems all known methods require me to grant rights to my genes to the sequencing organization (including some copyr…
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Right now the preparsing job uses the `zip` gem to unzip uploaded files, but uploaded files can come in a variety of flavours. FTDNA just updated their file format to be gz.
To do:
- [ ] In the …
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## Example: The GWAS Catalog Summary Statistics Format (GWAS-SSF)
The metadata YAML file of the GWAS-SSF standard obeys a schema standard.
- YAML example:
- YAML schema: https://github.com/EBI…
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I ran via the console and it gave a UnicodeEncodeError:
```
reading data from ../dna/genome
interpreting as a 23andme or exemplar formated data file
done reading data file
reading data from SNP…
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_Thanks so much for your interest in contributing to Whose Data?
If you haven't read the [Contributor Guidelines](https://github.com/samanthaburton/whose_data/blob/master/CONTRIBUTING.md) yet, please…
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I'm using aws ec2 ubuntu. It does not allow me to create an individual.
>>> user662 = l.create_individual('User662', '/home/ubuntu/myprojectdir/AaronAzuma.zip')
Traceback (most recent call last):
…
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Need to write some input checking and error handling for config file with helpful messages
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# Motivation
Currently, the curation process is a bit clunky, and we'd like to make it better. The current process is something like this:
1. Fork the repo
2. Find your YAML file
3. Create a P…