-
Hi Alex
Thanks for the great program.
I've been getting a segmentation fault error which happens with both the newest patch (2.7.10a_alpha_220601) as well as previous patches for 2.7.10a_alpha …
-
The current directory structure for the scRNA module set looks something like this:
```
training-modules/scRNA-seq$ tree
.
├── 00-scRNA-seq_introduction.md
├── 01-normalizing_scRNA-seq.Rmd
├── 0…
-
Hi, with the help of Rob I managed to get a Rust BD Rhapsody analysis tool to work (https://github.com/stela2502/Rustody).
It supports all versions of BD's beads at the moment, but not the (new) whol…
-
We support a Contribution Annotation Framework that allows us to indicate roles of conributors. However, many tutorials still use the "old" style contribution metadata (without roles)
Updating this…
-
Hi,
The latest pandas is 2.1.0, while pyroe needs pandas = 2.0. Degrading pandas to 1.5 will cause some compatibility issues with other packages. So could you update pandas ?
-
Issue with salmon for bulk RNA-seq
The following code was run to invoke salmon:
```
docker run --rm -v /labs/Resources/mmulatta/MMUL_10:/mnt/indexdir/ resources/salmon salmon index -t /mnt/indexd…
-
**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
The bug is related to building the index by combining genome and transcriptome reference.
**Describe the bug**
…
-
**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
salmon (buik mode)
**Describe the bug**
A clear and concise description of what the bug is.
I compiled the co…
-
**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
salmon
**Describe the bug**
I was trying to do salmon quant on multiple bam files together but got the error.
…
-
**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
in Salmon bulk mode, while using the following commands to create an index:
A. Ingredients preparation:
grep "^>…