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It would be great to implement benchmarking with [ASV](https://github.com/airspeed-velocity/asv) or similar so we catch any changes that introduce a performance regression.
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I am attempting to run through the short tutorial for making functional predictions using the default database. I am able to run through the majority of the code suggested here. However, I receive the…
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I am currently working with a data set where i want to cluster them into OTUs not ASVs in R. Is there a way to do this with DADA2? (I have already previously gone through the whole pipeline and got th…
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..to facilitate comparisons between any utility function changes + prevent regression when developing.
would be good to set up some macro benchmarks too, e.g. using SRR606249.sig.gz in test-data as…
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Hi @JHarrisonEcoEvo,
Can you provide an explnation of what denotes differentially abudant features from the output of `diff_abund` function? I tried to follow your RPubs vignette and read the paper…
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Establishing and documenting a standard benchmark suite for Parcels would bring an active focus to performance within the Parcels project.
This benchmarking suite could include whole simulation tests…
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[asv](https://github.com/airspeed-velocity/asv) is a project that can run benchmarks and create a nice website with the results and comparisons to previous versions. I would be really nice if it was p…
FFY00 updated
2 years ago
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Integrate the benchmark suite started in https://github.com/ivirshup/anndata-benchmarks into this package.
## Initial Goals
- [ ] Benchmarks for all basic operations
- [ ] Documentation on how …
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With V5 nearly ready, it was time we addressed the cryptography section so that it was more in-line with modern cryptographic approaches, including usability, security and addresses future concerns pe…
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Hi Chi, I have a pretty basic query, I need to do a corelation of a special ASV and several environmental variables, I guess I could try it with the following script
t1$cal_cor(use_data = “meco_data…