-
Hi Justin,
I'd like to set up a biolink API instance for Planteome. This provides a wrapper onto golr and the ontologies.
The URL could be http://biolink.planteome.org
the only dependency is…
-
Write generic SPARQL queries to transform OWL BioPax in BioLink
For pathwaycommons for example: http://www.pathwaycommons.org/archives/PC2/v10/PathwayCommons10.All.BIOPAX.owl.gz
-
A very common thing users might want to do is to compute the semantic similarity between nodes in a graph and then store that data back in the edges of the graph (to use as edge weights later).
I'v…
-
Related with: https://github.com/biolink/biolink-model/issues/1431
Update `https://identifiers.org/ncbigene/` to `http://identifiers.org/ncbigene/`
-
### Describe the bug
See https://github.com/monarch-initiative/monarch-ingest/issues/468#issuecomment-1564660130
Biolink imports linkml types (see https://github.com/biolink/biolink-model/blob/m…
-
Some examples here: https://arax.ncats.io/beta/?r=36527
example edge attribute list containing the attribute of interest:
```
--
attribute_type_id: | biolink:aggregator_knowledge_source
value_t…
-
Query:
```
{
"edges": {
"e00": {
"object": "n01",
"subject": "n00"
}
},
"nodes": {
"n00": {
"constraints": [],
"ids": [
"PUBCHEM.COMPOUND…
-
This fails to return results through the ARS, but can return results when sent to ARAX directly. Please investigate
```json
{
"workflow": [
{
"id": "fill"
},
{
"id"…
-
https://github.com/TranslatorSRI/PerformanceTestRunner/blob/24d8ead6f33a3ff998cf9bfef9dd22cc3dcae36c/PerformanceTestRunner/load_test.py#L250
-
Right now, our [first MVP1 template](https://github.com/biothings/bte_trapi_query_graph_handler/blob/main/data/templates/Drug-treats-Disease/Chem-treats-DoP.json) queries the root of the treats predic…