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Contacts are created from BioSamples ~~and BioProjects~~, but are not linked to the source BioProject which should be done using the ```chado.project_contact``` table.
BioSamples are linked to contac…
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I need to write a script that will update the i5k way of storing an organism to the chado way (organism_id).
The alternative is convert back and forth or assign a chadoprop to each organism and f…
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### Publication and Data Information
There are a number of avocado transcriptomes:
- https://www.sciencedirect.com/science/article/pii/S0304423818307064 - Accession: PRJNA258225
PRJNA258225 https…
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At present comments on annotations are kind of a dead end -- they get made and then just sit in the canto sessions, where someone may or may not ever read them.
We agreed that there's no current need…
mah11 updated
5 years ago
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When we query Chado we should ignore obsolete synonyms as there are some obsolete synonyms that are duplicated.
From an email from Val:
I think it can delete obsolete names. They are only preserved …
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Attempting to run the genotype_loader results in the following error:
Could not find germplasm type 'accession' with the vocabulary 'GCP germplasm[error]
ontology'
Lacey's initial response poin…
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## Context
This is the case when the same organism is sequenced multiple times, then there has to be a way to capture the information. Once we have the information we will be able to figure out which…
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part_of relation missing between SNAP receptor and membrane fusion.
https://user-images.githubusercontent.com/7359272/92286477-15eac500-eeff-11ea-9c85-c509f13a23a2.png
https://github.com/pombase…
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Hi,
Following the assembly of various genomes, now I have to propose dedicated visualization tools.
I installed a Chado database, which is accessible with a dedicated user that I named Chado. I can …
akmg6 updated
3 years ago
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This issue is a place for everyone working on fields to drop tips, tricks and bits of documentation that we can later incorporate into the official docs at https://tripaldoc.readthedocs.io/en/latest/.