-
https://matrix.to/#/!RQMxrGNGkeDmWHOaEs:gitter.im/$AJGFCdt6jVAn3aR5lQ0PK3_0SGgvFrubf5SMClsOgGA (a.k.a https://gitter.im/common-workflow-language/common-workflow-language?at=61d6a7bfbfe2f54b2e04661d )
…
-
Input
```
inputFileName_markDups:
type: File[]?
inputBinding:
position: 4
prefix: INPUT=
```
The call uses a _single_ BAM file from a previous step, not an array.
Causes the f…
-
Example: https://raw.githubusercontent.com/common-workflow-language/workflows/master/tools/GATK-IndelRealigner.cwl
-
We have a large monorepo with different languages and using Bazel as our build system. I have installed the plugin, added a `WORKSPACE` file with (`workspace(name="example")`) and a `.eclipse/.bazelp…
-
Hi there,
Just wondering if you have any plans to support CWL (common workflow language) in bpipe?
https://github.com/common-workflow-language/common-workflow-language
Regards
Dave
ghost updated
8 years ago
-
## Feature Request
### Desired behaviour
Reading the code, it isn't clear what will happen if an expression is used for secondary files.
I see that "^" seems to be handled as a special case in Lau…
-
```
Test [89/128] Test file literal as input
Test failed: /home/jenkins/cwlexec-0.1/cwlexec --outdir=/tmp/tmpgf1k1pyg --quiet v1.0/cat3-tool.cwl v1.0/file-literal.yml
Test file literal as input
…
-
File v1.0/formattest2.cwl is a CWL compliance test:
https://github.com/common-workflow-language/common-workflow-language/tree/master/v1.0
## Expected Behavior
cwltool --pack v1.0/formattest2.cwl…
-
### Description
The Vale Linter (natural language linter) implements spell check and other basic rules.
_https://github.com/errata-ai/vale
**Proposed Changes:**
1.Integrate a natural langu…
-
It would be interesting to be able to specify a default value for fields in schema_salad based specs. Currently they are mentioned in the documentation field, but this is not really machine readable (…