yuch7 cwlexec issues - Githubissues

yuch7 / cwlexec

A new open source tool to run CWL workflows on LSF

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Bump hibernate-core from 5.2.12.Final to 5.3.20.Final

#73 dependabot[bot] opened 1 year ago
0
Bump jackson-databind from 2.10.0.pr1 to 2.12.7.1

#72 dependabot[bot] opened 1 year ago
0
dockerOptions.sh as documented fails on short options

#71 fthommen opened 1 year ago
0
Bump jackson-databind from 2.10.0.pr1 to 2.13.4.1

#70 dependabot[bot] closed 1 year ago
1
Bump jackson-databind from 2.10.0.pr1 to 2.12.6.1

#69 dependabot[bot] closed 1 year ago
1
Bump hibernate-core from 5.2.12.Final to 5.4.24.Final

#68 dependabot[bot] closed 1 year ago
1
Bump h2 from 1.4.197 to 2.1.210

#67 dependabot[bot] opened 2 years ago
0
Bump h2 from 1.4.197 to 2.0.206

#66 dependabot[bot] closed 2 years ago
1
consider using 'cwljava' for CWL parsing

#65 mr-c opened 2 years ago
0
Bump logback-classic from 1.1.7 to 1.2.0

#64 dependabot[bot] closed 3 years ago
0
Don't *copy* result files.

#63 vinjana opened 3 years ago
1
Bump junit from 4.12 to 4.13.1

#62 dependabot[bot] closed 3 years ago
1
Bump jackson-databind from 2.9.10.4 to 2.10.0.pr1

#61 dependabot[bot] closed 4 years ago
1
Bump jackson-databind from 2.9.10.3 to 2.9.10.4

#60 dependabot[bot] closed 4 years ago
1
Bump jackson-databind from 2.9.10.1 to 2.9.10.3

#59 dependabot[bot] closed 4 years ago
3
Bump jackson-databind from 2.9.9.2 to 2.9.10.1

#58 dependabot[bot] closed 4 years ago
0
add travis-ci status

#57 jxngao closed 4 years ago
0
travis-ci support

#56 jxngao closed 4 years ago
1
Works with Jsrun?

#55 kshitij-v-mehta opened 4 years ago
0
CWLEXEC doesn't correctly run several subworkflows

#54 KateSakharova opened 4 years ago
0
CWLEXEC fails with Hibernate exception for workflows with more than 20 steps

#53 mscheremetjew opened 4 years ago
3
Regression after June 7th +29 CWL conformance tests fail

#52 mr-c opened 4 years ago
0
Update to change databind to version 2.9.9.2

#51 liangasdfgmail closed 4 years ago
1
Error: Could not find or load main class

#50 ionox0 opened 5 years ago
4
updated code to accept processors -n option in the LSF config file

#49 drkennetz closed 5 years ago
0
add the -n option to model.conf files

#48 drkennetz closed 5 years ago
9
Complete support for CWL 1.0

#47 susheel opened 5 years ago
0
ExpressionTool cannot return multiple arrays

#46 adamdingliang closed 5 years ago
2
update jackson-databind version to 2.9.9

#45 qiangjia closed 5 years ago
0
Resolve partial conformance test issues and issue #43

#44 qiangjia closed 5 years ago
0
ScatterFeature does not accept list of files as input: Java ClassCastException thrown

#43 mscheremetjew closed 5 years ago
4
Fix issue 41

#42 qiangjia closed 5 years ago
0
Failed to "Fill out the scatter gather result in the script"

#41 mscheremetjew closed 5 years ago
7
Update jackson to 2.9.8

#40 qiangjia closed 5 years ago
0
Empty JS array

#39 drjrm3 closed 5 years ago
1
Incorrect Null evaluation of file

#38 drjrm3 closed 5 years ago
1
Failed to evaluate the expression in the [std] field, string is required

#37 drjrm3 closed 5 years ago
5
Undefined javascript variable error

#36 drjrm3 closed 5 years ago
1
Failed to bind value

#35 drjrm3 closed 5 years ago
3
Undefined file on scatter

#34 drjrm3 closed 5 years ago
7
Bad Scatter in subworkflow

#33 drjrm3 closed 5 years ago
2
SchemaDefRequirement section: Imports of type definitions are not supported

#32 mscheremetjew opened 5 years ago
4
SingularityRequirement

#31 vinjana opened 5 years ago
11
cwlexec doesn't support inputs of type Array<enum>

#30 mscheremetjew closed 5 years ago
4
Cannot use Array type with inputs

#29 drjrm3 closed 5 years ago
2
Add more test cases

#28 skeeey closed 5 years ago
0
Fix ExpressionTool cannot access input directory listing files issue

#27 qiangjia closed 5 years ago
0
coresMin used instead of ramMin

#26 biokcb closed 5 years ago
1
Optional workflow input with tool-level default evaluates to null

#25 biokcb closed 5 years ago
2
ExpressionTool cannot access input directory listing files

#24 biokcb closed 5 years ago
3