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ahead of the CANMOD workshop, to ensure participants can just take a model off the shelf and simulate it
a few things that need to be done:
- [x] either write a small method to detect whether `Com…
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- [x] understand the fitting problem and model described here: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7614922/
- [x] determine if `macpan2` can help, and how
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---
title: "Data-augmentation Markov chain Monte Carlo for fitting semi-Markov breast cancer models to individual screens"
author: "Raphael Morsomme"
date: "Oct 30, 2023"
---
## A…
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Hello to everybody,
I tried permeability prediction in PK-Sim for three neutral compounds from the paper Thelen et al., 2011: theophylline, paracetamol, caffeine. The resulting permeabilities display…
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貼吧活動：(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
- Colla…
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The SI_products directory for example should be somewhere else, because if you try to create a compartmental model from this directory it will fail. But any directory in starter_models should be a va…
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The current version of [mk_calibrate](https://github.com/canmod/macpan2helpers/blob/main/R/calibrate.R) isn't quite working yet.
```r
library(macpan2helpers)
example("mk_calibrate")
```
will …
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Many time steps scale badly. Profiling with gprof suggest that expression evaluation is not the issue, but rather the saving of the simulation history. In particular the issue seems to be dynamic allo…
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**Describe the flaw**
In NEST 3.3 compartmental model documentation (https://nest-simulator.readthedocs.io/en/v3.3/models/cm_default.html), capacitances and conductances are expressed respectively in…