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As of now, make_glm_report() has to be run alongside the analysis since it expects a FirstLevelModel or SecondLevelModel object as input. It might be useful to have a feature that allows for post-hoc …
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Another interesting analysis alternative to the averaging procedure we use now is to use a linear model, where a binary (or continuous) response is predicted by the contrast values, and then taking th…
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We should agree on an organization strategy for the analysis pipeline.
**Option 1**: Do everything in a jupyter notebook
- By "everything" I mean, download the dataset from openneuro, segment t…
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When access haplotypes data, there are cases where there are no data for a given sample set and analysis, e.g., for the "arab" analysis where a sample set has no arabiensis samples. Currently the appr…
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### Description of feature
**Motivation**
Many projects will use a combination of `differentialabundance` and `rnasplice` analysis, using as input the processed data from `rnaseq`. Thus keeping t…
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**Summary:**
Improve color contrast in two functions of the slides page.
1:Text in header
2: DICOM Button
Improve accessibility by ensuring proper color contrast, Low Vision, and Colorblindnes…
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### Softwares
"SPM 7487"
### Input data
raw data
### Additional context
$ narps_description -t 0I4U --json
{
"general.teamID": "0I4U",
"general.NV_collection_link": "https://neurovault…
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**Suggestions and plans**
follow-ups to #119
- Replace pseudo-replicate-based workflow for pseudobulking to sample-based workflow
- Use a more informative contrast for between-cell type gene set e…
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At present, the vignette "Differential state analysis with `muscat`" only shows two possibilities for calling `pbDS`:
- Default: no design or contrast variables specified. Model is _\~ group_id_.
- …
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The eyetracker spits out pupil size data, and there is a rich literature surrounding pupillometry. So we should extract that data in a meaningful way and include some analysis of it.