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nf-core
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rnasplice
rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
https://nf-co.re/rnasplice
MIT License
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Checking contrast file fails although the correct header seems to be present
#159
tomsing1
opened
6 days ago
0
Error "reached CPU time limit"
#158
ValentineObrezanenko
opened
1 week ago
0
Important! Template update for nf-core/tools v3.0.2
#157
nf-core-bot
opened
2 weeks ago
0
Important! Template update for nf-core/tools v3.0.1
#156
nf-core-bot
closed
2 weeks ago
1
Important! Template update for nf-core/tools v3.0.0
#155
nf-core-bot
closed
2 weeks ago
1
Exception: Event ENSG00000004961 not found in pickled directory index. Are you sure this is the right directory for the event?
#154
mdozmorov
closed
2 weeks ago
4
github API rate limit
#153
KTMD-plant
closed
3 weeks ago
3
Error executing process > 'NFCORE_RNASPLICE:RNASPLICE:RMATS:CREATE_BAMLIST_SINGLE (1)' caused by: No such variable: bam -- Check script '/home/tud03125/.nextflow/assets/nf-core/rnasplice/./workflows/../subworkflows/local/../../modules/local/create_bamlist_single.nf' at line: 20
#152
tud03125
closed
1 month ago
1
Error executing process > 'NFCORE_RNASPLICE:RNASPLICE:EDGER_DEU:SUBREAD_FEATURECOUNTS (SRX12134688)', Caused by: Process `NFCORE_RNASPLICE:RNASPLICE:EDGER_DEU:SUBREAD_FEATURECOUNTS (SRX12134688)` terminated with an error exit status (255)
#151
tud03125
closed
1 month ago
32
Miso ERROR
#150
torres-HI
closed
1 month ago
12
Update samtools module
#149
jma1991
closed
2 months ago
1
Implement IsoformSwitchAnalyzeR
#148
jesseangelis
opened
2 months ago
2
build: nf-core modules update samtools/sort
#147
edmundmiller
closed
2 months ago
3
Contrasts to dev merge
#146
asmaali98
closed
3 months ago
1
Spare memory for samtools issue
#145
bc2zb
opened
4 months ago
2
AWSmegatests are failing
#144
FriederikeHanssen
opened
4 months ago
5
Back to Dev & increase memory for full size test
#143
FriederikeHanssen
opened
4 months ago
1
Implementation of IsoformSwitchAnalyzeR
#142
jesseangelis
opened
4 months ago
5
Make sample names header-like, FIX #140
#141
fhausmann
opened
4 months ago
0
DRIMSEQ_DEXSEQ_DTU_SALMON:DRIMSEQ_FILTER not working with special characters in sample names
#140
fhausmann
opened
4 months ago
0
Merged genes output
#139
SergioManzano10
closed
5 months ago
3
RNA splice output
#138
SergioManzano10
closed
5 months ago
0
`NFCORE_RNASPLICE:RNASPLICE:DRIMSEQ_DEXSEQ_DTU_SALMON:DEXSEQ_DTU (1)`
#137
SergioManzano10
closed
5 months ago
7
Important! Template update for nf-core/tools v2.14.1
#136
nf-core-bot
closed
2 weeks ago
1
Important! Template update for nf-core/tools v2.14.0
#135
nf-core-bot
closed
5 months ago
1
Miso error
#134
BulutHamali
closed
5 months ago
10
Typo fixes
#133
XanderC137
closed
5 months ago
1
Fix incorrect assignment of cluster groups
#132
jma1991
closed
5 months ago
1
Error in SUPPA: Clustergroups are assigned incorrectly
#131
spraeger
closed
5 months ago
4
Error single-end execution
#130
fcastillo1
closed
7 months ago
1
Error in DRIMSeq::dmDSdata(counts = counts, samples = samps)
#129
GimenaA
closed
6 months ago
3
Remove default value from miso_genes_file to prevent checking for false file
#128
adamrtalbot
closed
5 months ago
1
Important! Template update for nf-core/tools v2.13.1
#127
nf-core-bot
closed
5 months ago
1
ERROR ~ Error executing process > 'NFCORE_RNASPLICE:RNASPLICE:DRIMSEQ_DEXSEQ_DTU_SALMON:DRIMSEQ_FILTER (1)'
#126
IanCodes
opened
8 months ago
11
Patch fix v1.0.3
#125
jma1991
closed
8 months ago
1
Stop R converting sample names with '-' in string
#124
jma1991
closed
8 months ago
1
Important! Template update for nf-core/tools v2.13
#123
nf-core-bot
closed
7 months ago
0
Error: suppa_split_file.R Input_file must contain samplesheet samples.
#122
Mridul-Chaudhary
closed
8 months ago
2
Move read.table out of loop
#121
jma1991
closed
8 months ago
1
The processes for splitting files are running very slowly with large numbers of input samples
#120
amizeranschi
closed
8 months ago
5
MISO error
#119
ZeinBader
closed
7 months ago
3
Important! Template update for nf-core/tools v2.12
#118
nf-core-bot
closed
8 months ago
1
EXITING because of FATAL ERROR: Genome version: 20201 is INCOMPATIBLE with running STAR version: 2.7.9a
#117
petemeng
closed
8 months ago
2
Release of patch fix v1.0.2
#116
jma1991
closed
9 months ago
1
Patch fix v1.0.2
#115
jma1991
closed
9 months ago
1
Add missing example contrastsheet
#114
jma1991
closed
9 months ago
0
Specify pScreenAdjusted argument depending on analysis method
#113
jma1991
closed
9 months ago
1
contrast file problem?
#112
marwa38
closed
9 months ago
7
sashimi_plot error
#111
GimenaA
closed
9 months ago
2
Important! Template update for nf-core/tools v2.11.1
#110
nf-core-bot
closed
9 months ago
1
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