nf-core rnasplice issues

nf-core / rnasplice

rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis

https://nf-co.re/rnasplice

MIT License

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issues

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Checking contrast file fails although the correct header seems to be present

#159 tomsing1 opened 6 days ago
0
Error "reached CPU time limit"

#158 ValentineObrezanenko opened 1 week ago
0
Important! Template update for nf-core/tools v3.0.2

#157 nf-core-bot opened 2 weeks ago
0
Important! Template update for nf-core/tools v3.0.1

#156 nf-core-bot closed 2 weeks ago
1
Important! Template update for nf-core/tools v3.0.0

#155 nf-core-bot closed 2 weeks ago
1
Exception: Event ENSG00000004961 not found in pickled directory index. Are you sure this is the right directory for the event?

#154 mdozmorov closed 2 weeks ago
4
github API rate limit

#153 KTMD-plant closed 3 weeks ago
3
Error executing process > 'NFCORE_RNASPLICE:RNASPLICE:RMATS:CREATE_BAMLIST_SINGLE (1)' caused by: No such variable: bam -- Check script '/home/tud03125/.nextflow/assets/nf-core/rnasplice/./workflows/../subworkflows/local/../../modules/local/create_bamlist_single.nf' at line: 20

#152 tud03125 closed 1 month ago
1
Error executing process > 'NFCORE_RNASPLICE:RNASPLICE:EDGER_DEU:SUBREAD_FEATURECOUNTS (SRX12134688)', Caused by: Process `NFCORE_RNASPLICE:RNASPLICE:EDGER_DEU:SUBREAD_FEATURECOUNTS (SRX12134688)` terminated with an error exit status (255)

#151 tud03125 closed 1 month ago
32
Miso ERROR

#150 torres-HI closed 1 month ago
12
Update samtools module

#149 jma1991 closed 2 months ago
1
Implement IsoformSwitchAnalyzeR

#148 jesseangelis opened 2 months ago
2
build: nf-core modules update samtools/sort

#147 edmundmiller closed 2 months ago
3
Contrasts to dev merge

#146 asmaali98 closed 3 months ago
1
Spare memory for samtools issue

#145 bc2zb opened 4 months ago
2
AWSmegatests are failing

#144 FriederikeHanssen opened 4 months ago
5
Back to Dev & increase memory for full size test

#143 FriederikeHanssen opened 4 months ago
1
Implementation of IsoformSwitchAnalyzeR

#142 jesseangelis opened 4 months ago
5
Make sample names header-like, FIX #140

#141 fhausmann opened 4 months ago
0
DRIMSEQ_DEXSEQ_DTU_SALMON:DRIMSEQ_FILTER not working with special characters in sample names

#140 fhausmann opened 4 months ago
0
Merged genes output

#139 SergioManzano10 closed 5 months ago
3
RNA splice output

#138 SergioManzano10 closed 5 months ago
0
`NFCORE_RNASPLICE:RNASPLICE:DRIMSEQ_DEXSEQ_DTU_SALMON:DEXSEQ_DTU (1)`

#137 SergioManzano10 closed 5 months ago
7
Important! Template update for nf-core/tools v2.14.1

#136 nf-core-bot closed 2 weeks ago
1
Important! Template update for nf-core/tools v2.14.0

#135 nf-core-bot closed 5 months ago
1
Miso error

#134 BulutHamali closed 5 months ago
10
Typo fixes

#133 XanderC137 closed 5 months ago
1
Fix incorrect assignment of cluster groups

#132 jma1991 closed 5 months ago
1
Error in SUPPA: Clustergroups are assigned incorrectly

#131 spraeger closed 5 months ago
4
Error single-end execution

#130 fcastillo1 closed 7 months ago
1
Error in DRIMSeq::dmDSdata(counts = counts, samples = samps)

#129 GimenaA closed 6 months ago
3
Remove default value from miso_genes_file to prevent checking for false file

#128 adamrtalbot closed 5 months ago
1
Important! Template update for nf-core/tools v2.13.1

#127 nf-core-bot closed 5 months ago
1
ERROR ~ Error executing process > 'NFCORE_RNASPLICE:RNASPLICE:DRIMSEQ_DEXSEQ_DTU_SALMON:DRIMSEQ_FILTER (1)'

#126 IanCodes opened 8 months ago
11
Patch fix v1.0.3

#125 jma1991 closed 8 months ago
1
Stop R converting sample names with '-' in string

#124 jma1991 closed 8 months ago
1
Important! Template update for nf-core/tools v2.13

#123 nf-core-bot closed 7 months ago
0
Error: suppa_split_file.R Input_file must contain samplesheet samples.

#122 Mridul-Chaudhary closed 8 months ago
2
Move read.table out of loop

#121 jma1991 closed 8 months ago
1
The processes for splitting files are running very slowly with large numbers of input samples

#120 amizeranschi closed 8 months ago
5
MISO error

#119 ZeinBader closed 7 months ago
3
Important! Template update for nf-core/tools v2.12

#118 nf-core-bot closed 8 months ago
1
EXITING because of FATAL ERROR: Genome version: 20201 is INCOMPATIBLE with running STAR version: 2.7.9a

#117 petemeng closed 8 months ago
2
Release of patch fix v1.0.2

#116 jma1991 closed 9 months ago
1
Patch fix v1.0.2

#115 jma1991 closed 9 months ago
1
Add missing example contrastsheet

#114 jma1991 closed 9 months ago
0
Specify pScreenAdjusted argument depending on analysis method

#113 jma1991 closed 9 months ago
1
contrast file problem?

#112 marwa38 closed 9 months ago
7
sashimi_plot error

#111 GimenaA closed 9 months ago
2
Important! Template update for nf-core/tools v2.11.1

#110 nf-core-bot closed 9 months ago
1