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I appreciate very much the discussion about deriving priors from meta-analyses. However, I have troubles understanding the part on how to transform these priors to log scale. I would love to know (may…
jwnki updated
6 months ago
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#### issue
+ Update the function's description:
- Add more information about ridge plots.
- Change the term 'traces' for 'models.'
- The forest plot's description should specify that…
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Hey @rsullivan-lord,
I was able to get PyABC set up and working. It looks like it's able to get posteriors that make sense, which is good! Instead of predicting for the whole data set (i.e. 1980 to…
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Some parameters can be periodic - say a magnetic angle (PA reflectivity) or the phase of a sinusoid. Fitting from say 0 to 2π can give multiple solutions (depending on the model symmetry), in this ran…
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Hi Kevin.
I found the code in GitHub only tell us how to plot a network for each group plot_networks (obj). Is there any code for plotting the differential Network between case and control samples …
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This will make `describe_distribution` function in `parameters` more robust to failures.
It's especially difficult to find out which grouping level doesn't have enough observations when the functi…
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JASP 0.9.1, Windows 10, 64-bit.
The CI reacts to the hypothesis but the point estimate does not. If the point estimate has opposite sign of the hypothesis, this is particularly clear since the esti…
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We think that it's important to do a full Bayesian treatment of the GP hyperparameters, because extrapolation is quite sensitive to those parameters (especially the credible interval). I think we need…
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Currently predictions are only made using the expected value of the significant variables and so no credible intervals are calculated. Need to re-do this using the full posterior sample using inla.pos…
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How does one extract the 95% HPD intervals using Phylobayes? Is there a command for these to be calculated? It does not seem like they are included in the .chronogram file.
I am using Phylobayes 4.…