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Error, cannot locate star index at /home/mist/Mouse_M16_CTAT_lib_Feb202018/ctat_genome_lib_build_dir/ref_genome.fa.star.idx at /mistgpu/miniconda/lib/STAR-Fusion/STAR-Fusion line 508.
How to solve …
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Hello,
I used the STAR-Fusion v1.9.0 to built my genome lib with prep_genome_lib.pl, but no matter what version genome I used, all of them reported the following errors:
**died with ret 9 No such…
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I had no luck with the default setting, so I am trying the undocumented "full-monty" mode. However, this mode doesn't seem to work with the latest STAR-Fusion v1.9.1. Please see the output for the dia…
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Hi,
I ran STAR using this command:
STAR --runThreadN 12 \
--genomeDir
ref_genome.fa.star.idx \
--readFilesIn R1_val_1.fq.gz R2_val_2.fq.gz \
--outReadsUnmapped None \
--twopassMode Basic \…
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Hi Brian, i ran the following code.
perl STAR-Fusion --genome_lib_dir /home/jaxlee/GRCh37_gencode_v19_CTAT_lib_Mar012021.plug-n-play/ctat_genome_lib_build_dir --left_fq /data/shared/out-test/R_16_0…
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I'm trying to build the CTAT genome lib because the plug and play resources for Fv1.9 do not contain the genome lib build with gencode-v38 which is use during my pipeline.
I tried to generate the lib…
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Hi,
I'm running STAR-Fusion v1.8.1 via Singularity with the command:
******************************
singularity exec ~/star-fusion.v1.8.1.simg \
/usr/local/src/STAR-Fusion/STAR-Fusion \
…
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Hello ctat team,
I am trying CTAT v3.2.0.
After I run it, there were ~.vcf.gz and ~.XGBoost-classifier.vcf.gz.
I think the raw GATK result is ~.vcf.gz
(If I am looking for the variants from the…
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Hello,
I am incorporating STAR-Fusion into my RNAseq pipeline and I have found that the *Chimeric read filtering parameter* `--min_pct_MM_nonspecific|M` is not recognized correclty.
```
$ /path…
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Error, no seek pos for acc: 10_GL456015_alt at /home/tej/envs/DeepMod/anaconda3/envs/starfusion/lib/STAR-Fusion/FusionFilter/util/../lib/Fasta_retriever.pm line 71, line 214623852.
Fasta_retriever:…