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### What happened?
Hello
trying to run the workflow on the test mxp fastq. I have a Macbook Pro M2.
I would like to use a conda dedicated environnment. I tried to use the yaml file but get conflic…
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# Bug report
Using a template (A) in another one (B) works.
Trying to use that (B) in yet another one (C) doesn't work. PHPStan suddenly tries to resolve the template name of the second template…
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Issue is a summary of a slack thread that was hijacked on 2022-02-24. Julius at NYU had been holding off updating their rigs to v6.5.3, due to a failed update from 6.4.2 on a single rig that was never…
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Hi!
Thank you for your updated fast installation.
Unfortunately, I have a problem with `conda` when run the `bcbio_nextgen_install.py`.
**Version info**
- bcbio version: 1.2.9
- OS name and …
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**Description**
When I use bactopia , I encounter an err of building gather _sample .2.0.x.
**Steps to Reproduce**
Steps to reproduce the behavior:
`$bactopia-build.py '/home/kt/anaconda3/envs/…
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## Current Behavior
Deprecation warnings are raised due to invalid escape sequences. This can be fixed by using raw strings or escaping the literals. pyupgrade also helps in automatic conversion : …
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### setuptools version
56.0.0
### Python version
Python 3.8.8
### OS
Linux
### Additional environment information
None.
### Description
pytest based test suite i sfailing.
### Expected behav…
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### setuptools version
56.0.0
### Python version
3.8.12
### OS
Linux/x86_64
### Additional environment information
Full list of installed modules in build env
```console
[tkloczko@barrel SPEC…
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Following the report in jaraco/backports.functools_lru_cache#9, I went through the [six backports modules](https://github.com/jaraco?utf8=%E2%9C%93&tab=repositories&q=backports&type=&language=) I main…
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- [x] Remove remove all references in code to appointment endTime
- [x] Remove endDateTime from Appointments table in DB
I'm not sure which files this will affect. We can break this down by file …