-
Hello, I'm trying to replicate your prediction results for "CD4-positive_helper_T_cell-ENCODE" published in [Nature at 2021](https://www.nature.com/articles/s41586-021-03446-x#Sec9): as shown in the […
-
https://mp.weixin.qq.com/s/9SUcWmqfHNukADZuQiHVoA
ixxmu updated
1 month ago
-
Hi, I'm wondering that how could I apply this model on new cell type, for example, iPSCs? I can get Dnase-seq, H3K27ac data of iPSCs, and use the average Hi-C data as input, but for the normalization …
-
https://microbiomedata.github.io/nmdc-schema/Biosample/#class-biosample is trying to generate a YUML diagram from this URL:
https://yuml.me/diagram/nofunky;dir:TB/class/[TimestampValue],[TextValue]…
-
For example, `rna_volume` is defined in nmdc-schema and associated with `Biosample`. We even have some tests for it.
If it is important to capture that information in the SubmissionPortal, so that …
-
phs001457.v1.p1 - The immune cell landscape in kidneys of patients with lupus nephritis
### Project short name:
Hacohen-Human-CELseq2
### Primary Wrangler:
Arsenios
### Secondary Wrangler:
Anu
#…
-
### Context
We are encountering a new issue with resurveying requested experiments on the staging environment.
First we queued a large batch of requested experiments. These failed with miscellan…
-
Dear authors,
As ATAC and DNaseI assess open regions of the genomes, would a model trained on ATAC+(other epigenetic 1D maps mentioned in the Epiphany paper) be better suited than DNaseI for the pr…
-
When we say that some `Biosample` has `total_strontium` `{'has_numerical_value': 15, 'has_unit': 'ppm'}` , we are saying that the domain includes, at a minimum, the `Biosample` class. Possibly it incl…
-
Hi, I'm trying to use the public data as mentioned in the supplementary file: H3K27ac-ChIP: ENCFF384ZZM and DHS: wgEncodeUwDnaseK562AlnRep1.bam, wgEncodeUwDnaseK562AlnRep2.bam. And I also change the r…