AlexsLemonade refinebio issues

AlexsLemonade / refinebio

Refine.bio harmonizes petabytes of publicly available biological data into ready-to-use datasets for cancer researchers and AI/ML scientists.

https://www.refine.bio/

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issues

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Unblock refinebio processing

#3478 davidsmejia opened 3 weeks ago
0
Update common/setup.py and documentation around virtualenv

#3477 davidsmejia opened 3 weeks ago
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Dataset Request E-MEXP-1778

#3476 alexslemonade-bot opened 1 month ago
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failed to solve: failed to push ccdlstaging/dr_base:latest

#3475 EperLuo opened 1 month ago
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Refactoring of Load_Data

#3474 avrohomgottlieb closed 2 months ago
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Dataset Request DRP003718

#3473 alexslemonade-bot opened 2 months ago
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Dataset Request SRP076230

#3472 alexslemonade-bot opened 3 months ago
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Dataset Request SRP076230

#3471 alexslemonade-bot opened 3 months ago
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Dataset Request GSE21032

#3470 alexslemonade-bot opened 3 months ago
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Dataset Request SRP092408

#3469 alexslemonade-bot opened 3 months ago
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Dataset Request SRP126773

#3468 alexslemonade-bot opened 3 months ago
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Dataset Request SRP126773

#3467 alexslemonade-bot opened 3 months ago
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Dataset Request SRP145547

#3466 alexslemonade-bot opened 4 months ago
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Dataset Request SRP145547

#3465 alexslemonade-bot opened 4 months ago
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Dataset Request SRP145547

#3464 alexslemonade-bot opened 4 months ago
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SEO Implementation

#3463 nozomione closed 5 months ago
1
Bump jinja2 from 3.1.2 to 3.1.3 in /api

#3462 dependabot[bot] opened 5 months ago
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Add a prototype of Sample::developmental_stage backfill script

#3461 arkid15r opened 6 months ago
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Dataset Request E-MEXP-3405

#3460 alexslemonade-bot closed 6 months ago
1
Improve aggregated_metadata.json ordering

#3459 davidsmejia opened 7 months ago
1
Cycling credentials causes deployment issues

#3458 davidsmejia opened 7 months ago
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Production Deploy

#3457 davidsmejia closed 7 months ago
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scale up worker volume

#3456 davidsmejia closed 7 months ago
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3452 Ensure /var/www/volumes_static exists on container restart

#3455 davidsmejia closed 7 months ago
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Map static dir on API to /var/www/volumes_static on deploy

#3454 davidsmejia closed 7 months ago
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3452 move nginx logs and static files to /var

#3453 davidsmejia closed 7 months ago
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Move logs and static files from /tmp to /var

#3452 davidsmejia opened 7 months ago
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Bump django from 3.2.17 to 3.2.23 in /api

#3451 dependabot[bot] opened 7 months ago
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Bump django from 3.2.17 to 3.2.23 in /foreman

#3450 dependabot[bot] opened 7 months ago
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Staging API becomes unreachable shortly after deploy

#3449 davidsmejia closed 7 months ago
1
Scale up Staging API to t2.small

#3448 davidsmejia closed 8 months ago
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Add restart flag to API docker container

#3447 arkid15r closed 8 months ago
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Fix no-op tests

#3446 arkid15r closed 8 months ago
1
isort upgrade 5.11.5

#3445 davidsmejia closed 8 months ago
1
Follow redirect when downloading gene_indexes

#3444 davidsmejia closed 8 months ago
1
Bump urllib3 from 1.26.14 to 1.26.18 in /api

#3443 dependabot[bot] opened 8 months ago
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Add deploy box cleanup instructions

#3442 arkid15r closed 8 months ago
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Add API server SSH connection check

#3441 arkid15r closed 8 months ago
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Dataset Request SRP165732

#3440 alexslemonade-bot opened 8 months ago
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Dataset Request SRP165732

#3439 alexslemonade-bot opened 8 months ago
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Implement a backfill script for Sample::developmental_stage field

#3438 arkid15r opened 8 months ago
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API server won't start after deploy

#3437 arkid15r closed 8 months ago
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Test no-op job is failing: Illumina file won't process

#3436 arkid15r closed 8 months ago
1
Dataset Request SRP165732

#3435 alexslemonade-bot opened 8 months ago
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Dataset Request SRP324750

#3434 alexslemonade-bot opened 8 months ago
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Dataset Request SRP102952

#3433 alexslemonade-bot opened 8 months ago
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django-elasticsearch-dsl depracation warning

#3432 arkid15r opened 8 months ago
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Split downloaders/no_op test jobs

#3431 arkid15r closed 8 months ago
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Update pip requirements

#3430 arkid15r closed 8 months ago
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Update downloaders image

#3429 arkid15r closed 8 months ago
0