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In addition to humans and mice, we are concerned about the presence of ecDNA in other species, so will there be an update for custom reference genome databases in a later version?
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# 生信爱好者周刊(第 114 期):从复杂系统中,抓住奇妙的普适性
这里记录每周值得分享的生信相关内容,周日发布。
本杂志开源(GitHub: [openbiox/weekly](https://github.com/openbiox/weekly)),欢迎提交 issue,投稿或推荐生信相关内容。
[「生信周刊讨论区」](https://github.com/openbiox…
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https://mp.weixin.qq.com/s/rIFzAyqgJP_6ZtMJ9cvJZQ
ixxmu updated
4 months ago
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# 生信爱好者周刊(第 102 期):
这里记录每周值得分享的生信相关内容,周日发布。
本杂志开源(GitHub: [openbiox/weekly](https://github.com/openbiox/weekly)),欢迎提交 issue,投稿或推荐生信相关内容。
[「生信周刊讨论区」](https://github.com/openbiox/weekly/discuss…
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Hi,
Thanks for developing this great tool. Would it be possible to add an argument to AmpliconArchitect to force it to use a specific set of SV breakpoints? I know there's an option to include the…
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hello,
I have an ecDNA link and want to get the derivative chromosome. I assume the SVs are connected in the order of 1986-1982-1980-1958-1963-1969-1971, but the sequences seem are: chr7 94214606:…
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I am using `seqkit v2.4.0` and I tried to split my custom fasta by 4 parts with the command `seqkit split2 -p 4 -O ${output_path} ${input_fasta}`. However, the write function doesn't work. It only sav…
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Hi, Ms Huang,
Good to know this program at the Bioinformatics Meeting in Kaifeng @20230708. I would like to try this excellent program, but got many bugs
1. Is it possible to generate a list of…
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Hi, I use the AmpliconSuite-pipeline software to call ecDNA using my WGS data.
## Command
/Parastor300s_G30S/zhangjj/software/miniconda3/bin/python3 /parastor300/work01/zhangjj/software/AmpliconSu…
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NOTE: ASCAT does not support mouse genome, I need further check and generate a new solution for (allele-specific) copy number calling in mouse genomes.