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## Description
ftp.ncbi.nih.gov uses active mode. `list` command after login times out.
## Steps to reproduce
```rust
use suppaftp::FtpStream;
fn main() {
let parent_url = "ftp.ncbi.…
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Hi,
I was thinking of adapting this pipeline to take care of multiple reference genomes. Something like each sample would be aligned to different reference fasta file. Any votes for such a feature?…
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I have curated multi-gene displays for all datasets in the following profiles (very few have issues and I am keeping track of them and will create tickets later):
- Adult
- Aging
- Central auditory…
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Currently, database doesn't seem to pull papers based on author(s) e.g.
```bash
python query_data.py "Do you know of any papers authored by Edward Yang?"
```
```output
Response: Yes, based on …
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Hi Kai,
I have an anndata.AnnData, I can generate the snapatac2.AnnData as followed
```
# ann is an anndata.AnnData
sa2ann = snapatac2.AnnData(filename = "tmp.h5ad", X = ann.X)
```
When I perf…
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This is exactly the tool I have been dreaming of. However, I still have a few questions to ask:
Is it suitable for WGBS data?
Based on the same input format, can I use the matrix of ATAC-seq, ChIP…
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Hi! Thank you for developing this nice tool. I was wondering, is there an option to get mutation-level information about strand bias? i.e. for each mutation in each sample, is it leading/lagging or tr…
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@lpantano @gurgese @ThomasDesvignes @mhalushka @mlhack @keilbeck @BastianFromm @ivlachos @TJU-CMC @sbb25 @phillipeloher
Hi all,
It will be a little long email, but please take 15 min to go over…
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Hi,
I ran into errors when trying to write the anndataset
data=snap.AnnDataSet(
adatas=filtered_adatas,
filename=output.dataset
)
data.write(output.final_d…