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Answers questions like
1. How to get data
2. Where to get data from
3. Sfaira
4. ....
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Thank you very much for providing cellchat!
When I run the function computeCommunProb on my data, I met below error
```
V59.cellchat str(V59.cellchat@data.signaling)
Formal class 'dgCMatrix' [pac…
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some challenges with taking spheric, feature-based, linear clustering: (i.e. what is sacrificed from BiG-SCAPE or all-to-all pairwise comparison approach?)
1. Shorter BGCs and/or lack of features o…
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Currently reviewing 'phenotypic similarity evidence' branch and creating this ticket to document discussions and notes.
James
[phenotypic similarity evidence.docx](https://github.com/evidenceont…
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Hi, thank you for your great work!
When I run code below, the error is reported. Is there any step will add the bin_ids to anndata? Thank you.
`VisualUtils.show_gene_alignment(gene, aligner, ad…
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Hi all, @FelixKrueger @ewels
I tried to run the pipeline with some data, but I had no idea about how they have been produced. I know just that they are methylation data. SO when fastqc run, I saw …
ewels updated
5 years ago
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Wanted to try everything before I posted on here again haha 😅
Any help would be appreciated, Also talked to my colleague and once we have the data up and running I can share it with you so you can tr…
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Requests to the mapping API now return the error `Error in fetching metadata`. The same queries work if the IDs are passed with the `query` parameter (space separated list) rather than as a file, whic…
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Hi
I am using docker image for analysis. But Makefile is not running in one go, it is stopping after first step.
rsat_user@cde778d90cbd:~/rsat_results$ make -f peak-motifs.mk
Creating the result…
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cld is not able to access the gene_list.txt file (and will presumably also fail to read the params.txt).
Command used to run cld:
`docker run -v $PWD boutroslab/cld_docker cld --task=end_to_end -…