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Hi @copasi @pmendes. As you probably know, we're containerizing COPASI to make it available through [BioSimulations](https://biosimulations.dev). The metadata about COPASI is captured in [`biosimulato…
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In this case it's clear that both `SymbolicEpiModel` as well as `DeterministicEpiModel` are mean-field models. It should be possible to integrate both as well as to simulate both using Gillespie's alg…
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I recently played around with Rust for a stochastic simulation (dynamical Monte Carlo via Gillespie's algorithm). In order to increase the performance, I parallelized it via `std::thread` over differ…
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Starting a new ticket for the new year! This is a continuation of #7556.
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Is it possible for EoN to work with dynamic networks? Either through major modifications of the "agent" network or through the DyNetX package?
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**Submitting author:** @sdwfrost (Simon Frost)
**Repository:** http://github.com/sdwfrost/Gillespie.jl
**Version:** v0.0.1
**Editor:** @arfon
**Reviewer:** @vchuravy
**Archive:** 10.5281/zenodo…
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Hey,
I am trying to run a SIR model with initialzing values at
iniStates
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We should add more discrete aggeregators! Explicit (Euler) Tau-leaping is the obvious next step, with implicit Euler leaping and Trapezoid as the next steps (from one will come the others).
To imp…
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Q3. Its been nearly 4 weeks since my Q1 and Q2 in:
https://github.com/FLAMEGPU/FLAMEGPU2_dev/issues/307
Could somebody please confirm when or whether there will be a response or a request for cl…
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Note that I'm not even calling this to the level of a feature request.
The Gillespie algorithm is used to simulate stochastic, countable chemical reactions (and similar): https://en.wikipedia.org/w…