SciML JumpProcesses.jl issues

SciML / JumpProcesses.jl

Build and simulate jump equations like Gillespie simulations and jump diffusions with constant and state-dependent rates and mix with differential equations and scientific machine learning (SciML)

https://docs.sciml.ai/JumpProcesses/stable/

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issues

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add option to convert MassActionJumps to ConstantRateJumps

#427 isaacsas opened 2 weeks ago
3
remove support for unsuported julia versions

#426 oscardssmith closed 2 weeks ago
0
restrict FastBroadcast to 0.3 and delete the extension

#425 oscardssmith closed 2 weeks ago
5
Test master

#424 ChrisRackauckas opened 2 weeks ago
5
`FunctionMap` not defined

#423 TorkelE closed 1 month ago
7
CompatHelper: add new compat entry for FastBroadcast in [weakdeps] at version 0.3, (keep existing compat)

#422 github-actions[bot] closed 1 month ago
0
Seeding ensemble problems

#421 kaandocal opened 1 month ago
7
(Hierarchical) Exact Accelerated SSA

#420 ChrisRackauckas opened 2 months ago
1
Automatic selection of solver method (e.g. `SSAStepper()`)

#419 TorkelE opened 2 months ago
1
ci: standardise workflows using SciML's reusable workflows

#418 thazhemadam closed 1 month ago
0
Discrete events with repeated dosage fails for JumpSystems (fine ofr e.g. ODEs)

#417 TorkelE opened 2 months ago
7
Better documentation of `remake` mutating original problems

#416 TorkelE opened 2 months ago
0
network free solvers

#415 isaacsas opened 2 months ago
0
Bump julia-actions/setup-julia from 1 to 2

#414 dependabot[bot] closed 2 months ago
0
Uniformization Direct Methods

#413 ChrisRackauckas opened 2 months ago
0
Update simple_regular_solve.jl with new function BinomialTauLeaping

#412 c-louhichi opened 2 months ago
3
Fix test warnings

#411 isaacsas closed 3 months ago
2
figure out why CI is now taking a ridiculous amount of time

#410 isaacsas closed 3 months ago
2
use SII.finalize_parameters_hook! when updating problems

#409 isaacsas closed 3 months ago
4
Indexing fixes

#408 isaacsas closed 3 months ago
4
Add new reference to the JumpProcesses.jl version used for benchmark

#407 gzagatti closed 3 months ago
0
Print version Juliacon 2023 paper

#406 gzagatti closed 4 months ago
0
Add / use cache-optimized indexed priority queue in NRM-based methods.

#405 isaacsas opened 4 months ago
1
Complete 2nd rebuttal, fix #402

#404 gzagatti closed 4 months ago
6
reapply formatter

#403 ArnoStrouwen closed 4 months ago
0
Remarks about paper - episode 2 [JuliaCon Proceedings review]

#402 gdalle closed 4 months ago
5
ci: explicitly specify token for codecov

#400 thazhemadam closed 4 months ago
0
[skip ci] Update dependabot.yml

#399 ArnoStrouwen closed 4 months ago
0
Bump codecov/codecov-action from 3 to 4

#398 dependabot[bot] closed 4 months ago
1
Bump crate-ci/typos from 1.17.0 to 1.18.0

#397 dependabot[bot] closed 4 months ago
1
Bump actions/cache from 3 to 4

#396 dependabot[bot] closed 5 months ago
0
add references to other Julia libraries

#395 gzagatti closed 5 months ago
3
CompatHelper: bump compat for PointProcesses to 0.5 for package docs, (keep existing compat)

#394 github-actions[bot] opened 5 months ago
0
Bump crate-ci/typos from 1.16.23 to 1.17.0

#393 dependabot[bot] closed 5 months ago
1
Fix method ambiguities in spatial massaction jump

#392 Vilin97 opened 5 months ago
1
Juliacon2023 Latex Dependencies

#391 gzagatti closed 6 months ago
0
Certain Continuous Callbacks does not work for JumpProcessess

#390 TorkelE opened 6 months ago
14
aqua CI and related fixes

#389 isaacsas opened 6 months ago
3
Reenable formatter once SciMLStyle is fixed.

#388 isaacsas closed 3 months ago
0
drop tests for indexing problem with a parameter

#387 isaacsas closed 3 months ago
12
mutating parameter vector needs to call reset_aggregated_jumps!

#386 isaacsas opened 6 months ago
7
Ambiguity fix

#385 isaacsas closed 6 months ago
46
Method ambiguities reported by Aqua

#384 prbzrg opened 6 months ago
2
format with JuliaFormatter attempt 87 br

#383 isaacsas closed 3 months ago
3
[do not merge] rerun CI

#382 AayushSabharwal closed 6 months ago
1
Doc update v5

#381 gzagatti closed 6 months ago
2
Doc update v4

#380 isaacsas closed 6 months ago
4
CompatHelper: bump compat for RecursiveArrayTools to 3, (keep existing compat)

#379 github-actions[bot] closed 6 months ago
1
Bump actions/checkout from 3 to 4

#378 dependabot[bot] closed 6 months ago
0
typos CI

#377 ArnoStrouwen closed 6 months ago
2