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https://combine.api.biosimulations.dev/run/simulators
https://combine.api.biosimulations.dev/run/run
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[devils_v0_month.ipynb.zip](https://github.com/StochSS/sciope/files/7023644/devils_v0_month.ipynb.zip)
Data File:
[DFDT Population](Devils.proj/month_data/DFDT_occupancy_data.csv)
[Devil Populati…
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To replicate check out the 'docs/readme' branch.
```
============= in a terminal
python3 -m venv venv
source venv/bin/activate
python3 app.py
============= in a 2nd terminal
source venv/bin/a…
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---
id: gillespy2
version: 1.6.5
specificationsUrl: https://raw.githubusercontent.com/biosimulators/Biosimulators_GillesPy2/099b976e19ee66771ca27d349bf63f6353bc54d3/biosimulators.json
specificationsPa…
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After adding the checking in #686, I see that some trigger statements are converted to None instead of c++ code. This causes c++ compile errors using the HybridCSolver.
```
SimulationError: arg…
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To enable BioSimulations users to explore all simulation results, one report should be added to each SED-ML file for each task
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See the attached slightly expanded example of the dimerization model. In the complete trajectories, the 51. values are again the initial values 0 and 30 for dimer and monomer, very different from the …
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Hello,
I have wanted to try making stochastic SDE simulations (using the chemical Langevin interpretation of the model). I have read the documentations, but have not found any options. Is this poss…
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The current state of GillesPy2's live graphing feature will not allow this to be integrated
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Good day.
Based on a previous issue( #537) that involves the use of the Gillespie algorithm to simulate the stochastic trajectory of the polymerization of styrene in free radicals.
How do I invoke a…