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Hello,
I was trying to build an Autoannotate clustering from the command line using a command:
`autoannotate annotate-clusterBoosted clusterAlgorithm=MCL labelColumn=EnrichmentMap::GS_DESCR maxWord…
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I have prepared "DList" file as the instruction of package **preproc**, however, there is very few information about another two parameters in MetaQC, "**colLabel**" and "**GList**".
Q1, does "**cloL…
mzcs7 updated
5 years ago
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Hello,
I installed the GSEA desktop app but have encounter an error on a Mac device running Sonoma 14.0. The error says "GSEA quit unexpectedly". I tried on a different Mac running Ventura 13.5.2 a…
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Hi, I've successfully downloaded GSEA_4.1.0 and Cytoscape 3.8.2. I've analyzed my data using GSEA which has successfully generated enriched sets.
I also successfully went through the commands to bu…
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I wanted to know how the GSEA is performed and saw it seems to be done with this line:
https://github.com/shbrief/model_building/blob/fbf985f436df9ee65f98abe9fc93f97b7411b9e2/07_Final_Model.R#L107
…
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Is there any possibility for the package to support collections that don't correspond to the human collections H, C1, ..., C8? For example accessing MH, M1, ..., M8 listed at the link below?
https:…
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### Prerequisites
+ [x] Have you read [Feedback](https://guangchuangyu.github.io/dose/#feedback) and follow the [guide](https://guangchuangyu.github.io/2016/07/how-to-bug-author/)?
* [x] make sur…
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Hi,
I am trying to use compareCluster to compare enrichment analysis of different RNA-seq made on Apis mellifera (Honeybee).
however, i have got an error message
_Error in check_gene_id(geneList…
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Hi~
Recently I have realized that there is a more hidden parameters called `maxGSSize`, which really influence the result of enricher/GSEA analysis. According to the raw code in DOSE，I think it may…