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Hi,
This may be an issue from my side or I did not see something simple. But I was trying to calculate global Fst with some samples for days. I tried a number of different methods and still could no…
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jgx65 updated
4 years ago
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Hi Jérôme,
I am using average betas (betas$W) as pairwise FST between two populations. Would it be possible to implement CI for this parameter, like boot.ppfst would do for WC84 FST?
thanks!
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I tried to use the tidy_genomic_data function to reformat a filtered VCF file (generated by Freebayes via dDocent) into a suitable input file for COLONY. Below is an example of the errors, which appea…
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Hi Jerome,
I get an unused argument error for (betaij = TRUE) when trying to run the below script. My input data works for basic.stats(dat) and wc(dat). It also works for betas() when I don't inclu…
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Hi, I transformed my vcf data using , as suggested in the tutorial.
My data has 1120 samples and 2056 unlinked variants.
However when I use I get this error message:
Error in 1:sum(data[, 1]…
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Hi Thierry,
I'm trying out ibdg_fh, but I'm not sure I understand your modification to the way it's calculated in PLINK. It looks like I can recreate the radiator-calculated FH by dividing the diff…
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heythere,
i have your basic genind obj, and calling either hierfstat::boot.ppfis() or hierfstat::basic.stats() results in this error here:
Error in 1:sum(data[, 1] == i) : NA/NaN argument
In ad…
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I got the following error when trying to install hierfstat with `devtools::install_github()`:
`Error : (converted from warning) /tmp/RtmpYvI5iE/R.INSTALL1eca1279ea8f/hierfstat/man/fstat.from.adegen…
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The following script raises an error on the last line in my configuration:
The script:
```
library(adegenet)
library(hierfstat)
data(nancycats)
fstat.nancycats