-
The following writeup is from @mattions , send to FASP on 11/19:
Dear all,
me and Kurt have been talking about a possible way to link DRS with DURI to solve the Authorization part from the DRS p…
-
htsget streaming seems to return the whole region. htsget-rs receives the region specification but seems to always return all records. Reported upstream: https://github.com/umccr/htsget-rs/issues/248
-
Hello.
I would like to raise an issue from a slightly different perspective here. To be frank, I'm not very good at English. This text is written by DeepL, but on days when DeepL is off, Google Tr…
-
I was getting this error when running the given example test from README:
`python iMRM.py -i sequence.txt -o ccc.html -s Human -m all -t normal
`
checking over
Traceback (most recent call last):…
-
Currently, `modo.file_utils.extract_metadata` fails, if the cramfile is stored remotely, as it can not access the cramfile and its header. To enable this remote cramfiles should automatically be acces…
-
### Problem Statement
As new features are added to existing GA4GH specifications, new versions of these standards will be released. Even when a new specification version is released, not all implem…
-
Currently we set a fixed IP address for the minio service in docker compose, due to dns resolution problems from htsget when trying to reach minio. This fixed IP address is hardcoded in the htsget con…
-
**Operating system**
- Linux (Rocky 9.3)
When running, first with 8GB of memory and then with 32GB of memory, the OS is reporting OOM killing. Looking at the memory usage, the candig specific cont…
-
As a developer
I want sda-download to read the User-Agent header
In order to decide which key header should be used for re-encryption
Description
The htsget is currently forwarding all the header fro…
-
For CLI parameters, I think the length should be `-L` and the chromosomal region should should be `-r chr:from-to` to match samtools, etc. It should be possible to specify, e.g `-L 1000 -r chr1`.