popsim-consortium stdpopsim issues

popsim-consortium / stdpopsim

A library of standard population genetic models

GNU General Public License v3.0

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issues

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various fixes after msprime api updates

#1585 silastittes closed 1 week ago
3
beware of recapitation and missing data

#1584 petrelharp opened 1 month ago
1
Catalog updates

#1581 petrelharp closed 1 month ago
2
Document what sort of intervals `contig.add_dfe` expects

#1580 nspope opened 2 months ago
0
should post-SLiM simplify have `keep_input_roots=True`?

#1579 petrelharp opened 2 months ago
9
test regions outside left, right aren't simulated; closes #1577

#1578 petrelharp closed 2 months ago
1
add test that nothing is simulated outside of `left-right` on both msprime and slim

#1577 petrelharp closed 2 months ago
0
allow users to enable SLiM on Windows if they Really Want To

#1576 petrelharp closed 2 months ago
1
Update changelog for 0.2.1a release

#1575 nspope closed 2 months ago
1
more windows CI

#1574 petrelharp opened 2 months ago
0
revisit ExtendedEvents docs

#1573 petrelharp opened 2 months ago
0
debug windows CI

#1572 petrelharp closed 2 months ago
0
enable slim on windows

#1571 petrelharp opened 2 months ago
8
Remove shifting of coordinates

#1570 petrelharp closed 2 months ago
1
Move sweep API and extended events from `stdpopsim.ext` to `stdpopsim`

#1569 nspope closed 2 months ago
3
macos runners >12 won't support conda

#1568 nspope opened 2 months ago
0
Fix SLiM time units warning, bump minimum version to 4.0

#1567 nspope closed 2 months ago
2
numpy v2 and requirements.txt

#1566 petrelharp opened 2 months ago
1
Release 0.2.1 checklist

#1565 andrewkern opened 3 months ago
3
migration rates fixed to be consistent with the code (issue #1562)

#1564 jiseonmin closed 4 months ago
2
SLiM Support in Windows

#1563 daikitag opened 4 months ago
3
Typo in documentation?

#1562 jiseonmin closed 4 months ago
3
move PhoSin QC where it should go

#1561 petrelharp closed 4 months ago
5
added QC for vaquita DFE

#1560 ckyriazis closed 4 months ago
4
Restarting simulations in SLiM engine (community.allScriptBlocks.active property)

#1558 jmurga closed 2 months ago
3
document QC procedure for DFEs

#1557 petrelharp opened 5 months ago
0
Getting started with DFE for MusMus

#1556 peterdfields opened 6 months ago
0
DFE for MusMus

#1555 peterdfields opened 6 months ago
10
orangutan model how to add adaptive introgression?

#1554 h-pawar opened 6 months ago
1
updates to hash codes and file names

#1553 silastittes closed 6 months ago
11
change to pip install in dev docs

#1552 petrelharp opened 7 months ago
0
cached files need python version information in filenames

#1551 petrelharp closed 3 months ago
15
remove custom log message editing (closes #1545)

#1550 petrelharp closed 6 months ago
3
time units mismatch warning

#1549 petrelharp closed 2 months ago
1
QC for DFE model Gamma_R22 for Vaquita (PhoSin)

#1548 igronau closed 4 months ago
9
Implementation for Vaquita DFE

#1547 igronau closed 7 months ago
2
Mutation model

#1546 daikitag opened 7 months ago
1
error in logging from SLiM engine

#1545 petrelharp closed 6 months ago
0
Deprecated pandas operation (`Calling int on a single element Series`)

#1544 daikitag closed 3 months ago
2
Add detail about SLiM install to installation docs

#1541 hyanwong opened 10 months ago
2
add docs for using DFEs in other species

#1540 petrelharp closed 10 months ago
1
Mus mus Cox map, try two

#1539 peterdfields opened 11 months ago
3
Vaquita QC

#1538 ckyriazis closed 11 months ago
6
new checksums

#1537 chriscrsmith closed 11 months ago
4
updated to ensembl release 110; did some patching

#1536 andrewkern opened 11 months ago
3
Add journal & volume / page to citation

#1535 hyanwong closed 11 months ago
3
Fix find-conda step in tests.yml

#1534 nspope closed 11 months ago
1
Replicate CI failure

#1533 nspope closed 11 months ago
1
Fix conda failure in CI

#1532 nspope closed 11 months ago
2
Implemented QC for three mouse demographic models

#1531 igronau closed 11 months ago
2