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- I think about the command line way of calling ImageJ functions in jupyter with default Ipython kernel:
### Marco file
- Here's an example of how you can do this in a Jupyter notebook with an IPy…
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Automatically scan ImageJ for PluginFilter classes, which could be included as modules. This would, by default, add lots more functionality without the need to explicitly create modules. Will requir…
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My ROIs are manual segmented using ImageJ and exported as a RoiSet.zip file. I used [this script](https://github.com/rochefort-lab/fissa/blob/master/examples/basic_usage.py) to run FISSA, and run into…
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## 🐛 Bug
when loading a .tif file that has been saved with Fiji, the scale (a.k.a. voxel size) is not read in.
## To Reproduce
Steps to reproduce the behavior:
1. Start Fiji
2. Click menu…
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The [Downloads page](http://imagej.net/Downloads) currently has two major download sections:
- A build of ImageJ2 from the [master branch](https://github.com/imagej/imagej/tree/master).
- Bundles of F…
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Hi and thank you for maintaining the ImageJ Server plugin, after so much time!
I have an issue on all my computer, using the last version of Fiji, version 1.54 of imageJ, an old version of ImageJ2.…
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**Is your feature request related to a problem? Please describe.**
Suggested on the image.sc forum: https://forum.image.sc/t/repository-for-cellfinder-classifier-for-cfos-detection/100259
**Descri…
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I installed sciview in my Fiji Java8 and got the same error report as #563. So I followed a series of suggestions under that issue (and the related zulipchat) like installing a no-jre edition of Fiji,…
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Hello,
I have started using the SME projection plugin in Fiji on confocal microscopy stacks. It works nicely but the output says "SME_projection- Wide -Field". I tried both options (confocal and wid…
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I have been trying to update a manually-jaunched `Fiji.app` with the `SciJava-Ops` update site, which also ships an updated Jaunch. This has brought up some weirdness.
Here's what I did:
1. Downlo…