rochefort-lab fissa issues

rochefort-lab / fissa

A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.

GNU General Public License v3.0

30 stars 28 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

[pre-commit.ci] pre-commit autoupdate

#293 pre-commit-ci[bot] opened 1 month ago
1
CI: Fix running doc bulid test with ghpages action

#292 scottclowe closed 2 months ago
1
Add cap to numpy and shapely version support, fix tests, upgrade precommit

#291 scottclowe closed 2 months ago
2
Bump black from 21.12b0 to 24.3.0

#290 dependabot[bot] closed 2 months ago
2
IndexError: list index out of range

#289 aurallaura opened 1 year ago
2
ROIs segmented using ImageJ cannot be converted

#288 just-meng opened 1 year ago
17
Sklearn compatibility

#287 darikoneil opened 1 year ago
2
Raw signals do not match suite2p raw signals for the same rois

#286 just-meng opened 2 years ago
1
[pre-commit.ci] pre-commit autoupdate

#285 pre-commit-ci[bot] closed 2 months ago
1
REL: Add updates from release of Version 1.0.0

#284 scottclowe closed 2 years ago
1
REL: Release version 1.0.0

#283 scottclowe closed 2 years ago
2
DOC: Add a step in release notes to map hard documentation links

#282 scottclowe closed 2 years ago
1
DOC: Remove elastic search from on readthedocs

#281 scottclowe closed 2 years ago
1
API: Rename run_fissa argument export_to_matlab -> export_to_matfile

#280 scottclowe closed 2 years ago
2
JNB: Improve basic notebooks

#279 scottclowe closed 2 years ago
2
DOC: Change HTML notebook links to point to docs page

#278 scottclowe closed 2 years ago
1
DOC+BUG: Prevent nbconvert error missing jinja2.utils.escape

#277 scottclowe closed 2 years ago
1
`IndexError: list index out of range` while doing experiment.separate()

#276 GergelyTuri opened 2 years ago
3
MNT: Don't tell people to use legacy mode on experiment.to_matfile

#275 scottclowe closed 2 years ago
1
MNT: Prevent deprecation warning about alpha removal in sklearn v1.2

#274 scottclowe closed 2 years ago
1
DOC: Incorporate notebooks into Sphinx docs using nbsphinx

#273 scottclowe closed 2 years ago
2
MNT: Change Shapely polygons to use geoms attribute

#272 scottclowe closed 2 years ago
1
MNT: sklearn deprecation of alpha parameter to NMF

#271 scottclowe closed 2 years ago
1
DOC: Fix URL pointing to function-based notebook

#270 scottclowe closed 2 years ago
1
DOC: Change functional to function-based

#268 scottclowe closed 2 years ago
2
JNB: Fix typo in notebook

#267 scottclowe closed 2 years ago
2
REL: Fix dependency rot of pytest-flake8 for Python 2.7

#266 scottclowe closed 2 years ago
1
Matlab output & nRegions

#265 MikiBii opened 2 years ago
1
CI: Test on Python 3.10

#264 scottclowe closed 2 years ago
2
CI: Remove broken pdf documentation action

#263 scottclowe closed 3 years ago
1
[pre-commit.ci] pre-commit autoupdate

#262 pre-commit-ci[bot] closed 2 years ago
2
JNB+DEV: Updates to nbqa for notebook pre-commit

#261 scottclowe closed 3 years ago
1
[pre-commit.ci] pre-commit autoupdate

#260 pre-commit-ci[bot] closed 3 years ago
1
JNB:DOC:RF: update Binder environment and move Suite2p example to different Binder

#259 swkeemink closed 3 years ago
7
DEV: Bump black 21.6b0 -> 21.7b0

#258 pre-commit-ci[bot] closed 3 years ago
1
JNB:BUG: updated Suite2p notebook for Suite2p API changes

#257 swkeemink closed 3 years ago
1
MNT: Decorate DataHandlerAbstract as an abstract class

#256 scottclowe closed 3 years ago
1
TST: Improvements to core tests

#255 scottclowe closed 3 years ago
1
ENH: Automatically wipe output properties when parameter attributes change

#254 scottclowe closed 3 years ago
4
DOC: Improve docstrings

#253 scottclowe closed 3 years ago
1
MNT: Rename loop variables

#252 scottclowe closed 3 years ago
1
RF: Make loop more pythonic

#251 scottclowe closed 3 years ago
1
REL: Add pyproject.toml

#250 scottclowe closed 3 years ago
1
API: Add to_matfile which saves all the FISSA parameters and outputs

#249 scottclowe closed 3 years ago
0
JNB: Improvements to notebooks

#248 scottclowe closed 3 years ago
1
MNT: Suppress warnings (again)

#247 scottclowe closed 3 years ago
1
API: Rename output preparation.npz -> prepared.npz

#246 scottclowe closed 3 years ago
1
ENH: Compare analysis params when loading from cache

#245 scottclowe closed 3 years ago
1
BUG: De-synchronisation in shape

#244 scottclowe closed 3 years ago
1