rochefort-lab fissa issues

rochefort-lab / fissa

A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.

GNU General Public License v3.0

30 stars 28 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

MNT: Suppress warnings

#243 scottclowe closed 3 years ago
1
API: Change outputs from extract func

#242 scottclowe closed 3 years ago
1
[pre-commit.ci] pre-commit autoupdate

#241 pre-commit-ci[bot] closed 3 years ago
1
ENH: New verbosity=2: argument description and progress bars

#240 scottclowe closed 3 years ago
1
JNB: Add verbosity control example to notebooks

#239 scottclowe closed 3 years ago
1
ENH: Verbosity improvements

#238 scottclowe closed 3 years ago
2
API:ENH: Adding raw traces as an output for the functional interface

#237 swkeemink closed 3 years ago
2
DOC: Improve docstrings

#236 scottclowe closed 3 years ago
1
TST: Test neuropil.separate verbosity

#235 scottclowe closed 3 years ago
1
DEV: Update pre-commit stack and fix executable files

#234 scottclowe closed 3 years ago
1
DOC: Don't need to specify version added for params in unreleased function

#233 scottclowe closed 3 years ago
1
DOC: Add default values to docstrings

#232 scottclowe closed 3 years ago
1
API: Add maxiter, tol, maxtries, verbosity to str and repr

#231 scottclowe closed 3 years ago
1
API: Rename maxiter and maxtries to max_iter and max_tries

#230 scottclowe closed 3 years ago
2
CI: Timeout tests that run too long

#229 scottclowe closed 3 years ago
1
JNB: Remove holoviews

#228 scottclowe closed 3 years ago
2
ENH: use joblib instead of multiprocessing

#227 swkeemink closed 3 years ago
5
TST: Remove unnecessary caching during tests

#226 scottclowe closed 3 years ago
1
Verbosity fixes

#225 scottclowe closed 3 years ago
2
API: Expose three separation parameters to fissa UI

#224 swkeemink closed 3 years ago
4
ENH: Save analysis params to prep/sep npz cache

#223 scottclowe closed 3 years ago
1
TST: Explicitly test with cores set to None

#222 scottclowe closed 3 years ago
1
TST: Don't run separate when only testing prep steps

#221 scottclowe closed 3 years ago
1
JNB:BUG:ENH: Fix Suite2p example, and update Binder environment for Python 3.9

#220 swkeemink closed 3 years ago
8
API: Rename module ROI -> polygons

#219 scottclowe closed 3 years ago
1
DOC: Don't mention Py 3 requirement in _parse_roi_file_py3

#218 scottclowe closed 3 years ago
1
DEV: Fix flake8 issues and add pre-commit

#217 scottclowe closed 3 years ago
1
[pre-commit.ci] pre-commit autoupdate

#216 pre-commit-ci[bot] closed 3 years ago
2
STY: Change code style to black

#215 scottclowe closed 3 years ago
1
DOC: Fix docstrings

#214 scottclowe closed 3 years ago
0
MNT: Fix deprecated np.float

#213 scottclowe closed 3 years ago
0
MNT: Init arrays with np.empty, dtype=object instead lists of None

#212 scottclowe closed 3 years ago
0
TST:MNT: Ignore ConvergenceWarning when intentionally not converging

#211 scottclowe closed 3 years ago
1
DOC+BUG: Missing : separator on readthedocs

#210 scottclowe closed 3 years ago
1
ENH: Add __repr__ and __str__ methods

#209 scottclowe closed 3 years ago
0
MNT: Move self.clear to top of init

#208 scottclowe closed 3 years ago
0
DOC: Add note about deltaf_result baseline

#207 scottclowe closed 3 years ago
1
MNT: Raise an error when both lowmemory mode and manual datahandler are set

#206 scottclowe closed 3 years ago
1
JNB: Don't overwrite output_folder from datetime-based folder

#205 scottclowe closed 3 years ago
1
DOC: Improve core docstrings

#204 scottclowe closed 3 years ago
1
RF: Change pool functions to take keyword arguments

#203 scottclowe closed 3 years ago
1
TST: Extend core tests

#202 scottclowe closed 3 years ago
1
TST:RF: Move common core test operations into helper methods

#201 scottclowe closed 3 years ago
1
ENH: Add verbosity argument

#200 swkeemink closed 3 years ago
3
BUG: Saving and loading None values

#199 scottclowe closed 3 years ago
1
API: Change the shape of deltaf_raw to have the same number of dimensions as other outputs

#198 scottclowe closed 3 years ago
1
TST: Test matfile output

#197 scottclowe closed 3 years ago
1
[pre-commit.ci] pre-commit autoupdate

#196 pre-commit-ci[bot] closed 3 years ago
2
CI:GHA: Always run tests, don't skip based on content

#195 scottclowe closed 3 years ago
1
DOC: Graceful degradation of sphinx theme

#194 scottclowe closed 3 years ago
1

Previous Next