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https://github.com/BIOP/qupath-biop-extensions/tree/imglib2-include/src/main/java/ch/epfl/biop/qupath/transform
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Create a dataset like this (kotlin):
```kotlin
import net.imglib2.img.array.ArrayImgs
import org.janelia.saalfeldlab.n5.GzipCompression
import org.janelia.saalfeldlab.n5.hdf5.N5HDF5Writer
import …
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@constantinpape trying to open the data from Jonas' project I am getting:
```
Caused by: hdf.hdf5lib.exceptions.HDF5DatatypeInterfaceException: Can't convert datatypes ["H5Tconv.c line 5236 in H5T…
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Some classes in imglib2-algorithm are labeled deprecated, e.g. [`net.imglib2.algorithm.gauss.Gauss`](https://github.com/imglib/imglib2-algorithm/blob/master/src/main/java/net/imglib2/algorithm/gauss/G…
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The ImgLib2 library has type-agnostic support for numerical data processing. As such, it would be great to have numerical types based on Java's `BigInteger` and `BigDecimal`, for arbitrary-precision i…
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I'm having some issues with initialization in a Docker container. `ij = imagej.init()` will hang indefinitely. I have not been successful yet in getting it to initialize. Here are the debug stateme…
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Hi Preibisch Lab, BigStitcher has been an incredible tool, and really made my project possible. Since the recent round of heavy Fiji updates, I'm no longer able to do image fusion with content based …
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FIJI - everything is up to date, StarDist seems to be CPU mode.
The 1000x1000 pixels cropped image from the same data is processed ok with default parameters.
The 32kx32k original crashes with:
[…
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### The env
![image](https://github.com/imagej/pyimagej/assets/79073164/bc1e7352-ff33-474b-84bf-8606…
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I had a discussion with @tomburke-rse and @carlosuc3m about plans and general design for the bioimageio java support.
We currently have these main issues on the java side:
- different java based co…