imagej pyimagej issues - Githubissues

imagej / pyimagej

Use ImageJ from Python

https://pyimagej.readthedocs.io/

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Minor doc changes in 11-Working-with-the-original-ImageJ.ipynb

#319 WillGiang closed 3 weeks ago
1
Add ij.run_script signature that takes file paths

#318 hinerm opened 3 weeks ago
0
Improve Jupyter Dynamic Install instructions

#317 gselzer closed 4 weeks ago
5
ij.py.run_script returns the wrong type

#316 gselzer opened 1 month ago
1
Use the `ruff` linter/formatter

#315 elevans closed 1 month ago
1
Unsupported type: <java class 'net.imglib2.type.numeric.real.DoubleType'> in ij.py.from_java()

#314 YunxiaoWangwww opened 1 month ago
3
Plugins in the plugin folder cannot be used if they are just .class files.

#313 odinsbane opened 3 months ago
4
Arguments passed to `run_plugin` replace backslash with forward slash

#312 matham opened 3 months ago
0
JVM required files

#311 CanYing0913 closed 1 month ago
1
Several issues running `make test` on osx-arm64 machine

#310 jschneidereit closed 4 months ago
2
Missing `liux-aarch64` builds for PyImageJ on `conda-forge`

#309 elevans opened 4 months ago
0
TypeError: 'NoneType' object is not callable when initializing imagej

#308 belenal opened 4 months ago
5
RuntimeError: Failed to create a JVM with the requested environment

#307 carshadi closed 5 months ago
11
Suggestion : remove Labeling dependency

#306 b-grimaud closed 5 months ago
6
I am getting

#305 tugsjargal1 closed 5 months ago
1
Add dimension re-ordering support to `to_dataset()` method

#304 elevans opened 6 months ago
1
How to get the printed result as python variables

#303 54601 closed 6 months ago
9
How to get measurement results from BoneJ plugin?

#302 mol666 closed 6 months ago
2
Add callback mechanism for GUI mode

#301 elevans opened 8 months ago
3
Testing your installation - failed

#300 danidean opened 8 months ago
0
add conda-forge as channel to env create command

#299 radRoy closed 5 months ago
1
Make interactive mode work on macOS

#298 elevans opened 9 months ago
4
EXCEPTION_ACCESS_VIOLATION (0xc0000005)

#297 UserA213 opened 10 months ago
1
java.lang.java.lang.NoClassDefFoundError

#296 nicknamexiaozui opened 10 months ago
11
Finish the global gateway logic for better macOS support

#295 ctrueden opened 11 months ago
2
Map ImgLib2 ColorTable objects to/from Python cmap.Colormap

#294 ctrueden opened 11 months ago
0
Consider using magicgui for notebook interactivity

#293 ctrueden opened 11 months ago
0
cannot open nii or nii.gz file

#292 weitongwei closed 1 year ago
2
Failed to create a JVM with the requested environment.

#291 JeBiUKD opened 1 year ago
6
Add deconvolution and texture analysis notebooks for I2k 2023

#290 elevans closed 1 year ago
5
imagej doctor should recognize non-zero return values

#289 hinerm opened 1 year ago
0
Update PyImageJ docs to use Miniforge instead of Mambaforge

#288 elevans closed 1 year ago
2
Setting up PyImageJ without internet access

#287 KSchmidtACR opened 1 year ago
3
ImgLabeling conversions use suboptimal tmp directory

#286 ctrueden opened 1 year ago
0
Ij.io().open() raises java.lang.NullPointerException

#285 biosciflo opened 1 year ago
4
Remove warning in upcoming cellpose/stardist segmentation jupyter notebook

#284 elevans opened 1 year ago
0
Add conversion support for index images to ImgLib2 and legacy ImageJ ROIs

#283 elevans closed 10 months ago
9
A bug in the Use cases"Classic Segmentation: Segmentation workflow with original ImageJ functions" in PyImageJ’s documentation

#282 mol666 closed 1 year ago
3
Using KymographBuilder Plug-in does not show output image if using PyImageJ in Python

#281 JeBiUKD closed 1 year ago
4
Wrapping a local Fiji.app installation leads to bad classpath

#280 ctrueden closed 1 year ago
4
Send ImageJ results table to Python

#279 clarenzheng closed 1 year ago
3
pyimagej image.init() FileNotFoundError: [Errno 2] No such file or directory: ~.m2/repository/io/scif/scifio-labeling/0.3.1/scifio-labeling-0.3.1.jar

#278 benwilks opened 1 year ago
3
Include a headless scripting example that uses macros and Fiji plugins

#277 AdamDHines closed 4 months ago
6
Update ImageJ2/Fiji version in the docs and improve toc layout

#276 elevans closed 1 year ago
4
ZProjector for Stack Image

#275 chandrasekarnarayana closed 1 year ago
2
Using PyimageJ to collect width by height for individual objects.

#274 BrandonUL opened 1 year ago
3
imagej in java code is not regconized

#273 chautuankien opened 1 year ago
2
SystemError: java.lang.NoClassDefFoundError

#272 chautuankien closed 1 year ago
1
imp.show() not working for Bio-format loaded .tif stacks

#271 AdamDHines closed 1 year ago
7
How to use Pyimagej on Python

#270 chautuankien closed 1 year ago
1