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Dear author,
Do you know why we can't download juicebox ?
https://github.com/aidenlab/Juicebox/wiki/Download
![image](https://github.com/aidenlab/Juicebox/assets/37776318/1ae50ce3-a3a2-4d…
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this was on adam. The working directory was /HIC1000/CTCF_mutants_casellas/mES_ZF8/combined
command: /aidenlab/HiCTools/juicebox.sh hiccups -m 1000 -r 5000,10000,25000 -f 0.1,0.1,0.1 -p 4,2,1 -i 7,5,…
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Using the following configurations for HiCCUPS:
Config res: 5 peak: 5 window: 10 fdr: 10% radius: 30
WARNING - You are using the CPU version of HiCCUPS.
The GPU version of HiCCUPS is the official v…
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When attempting to launch Juicebox on Scientific Linux 7.7 with OpenJDK JRE 64-Bit 1.8.0, regardless of the version of Juicebox attempted it opens a completely blank window. There is a titlebar and a …
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Dear Authors,
Thanks for the great tool. I am using this tool to assemble de novo vertebrate genome. I got the following file after running
` juicer pre -a -o out_JBAT hic-to-contigs.bin scaffold…
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Hi,
I am running into the error below with hiccups. I am trying to reproduce some published data, which used defined settings with hiccups. I downloaded the pairsam file:
```
#columns: readID chr…
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"Thank you for your excellent work on genome scaffolding. I would like to seek your help to further improve the scaffolding for our genome.
We are studying a diploid plant species with an expected …
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When i use the juicer eigenvector to get a result file. But i can not put the result into the juicebox. What should i do to switch the result file into a file that can be put into the juicebox.
thank…
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When jumping to the diagonal within Juicebox on a Windows machine, Juicebox will slightly jump away from the static horizontal/vertical position one was in before.
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**Github username:** --
**Twitter username:** --
**Submission hash (on-chain):** 0xeb8df6f7a7695cf9dd0cdf1b0ed0c5bda5bdc20ba790bc9a3a95a5b4aa24a512
**Severity:** medium
**Description:**
**Descriptio…