-
Hi,
I am using hichipper and diffloop to analyse my H3K27Ac HiChip data. Is that a way to convert hichipper output into .hic file for JuiceBox visualization?
Thanks,
Ana
-
Recently, we use your FAN-C to run the TAD analysis (insulation score). We want to set the window size as 40kb, but it not succeed with fllowing information:
```
fanc insulation ../LW_180d_Fat_Hi…
-
Love this idea..
https://www.reddit.com/r/homeassistant/comments/7oke16/floorplan_heatmap/
Would need more remote temp modules though.
-
"Thank you for your excellent work on genome scaffolding. I would like to seek your help to further improve the scaffolding for our genome.
We are studying a diploid plant species with an expected …
-
After setting up s3 and setting juicebox to true, i run enduro on the project and this is the message i receive:
```
┌————————————————————~—setting up s3—~—————————————————————┐
? Input your s3 k…
-
Well, today is the day we've all been waiting for. Enel X Way NA is shutting down. Thousands of angry people looking for a solution. It is time to shine - end of the horrible app era, and beginning of…
-
Hello, I have ran HiC-Pro and generated my validpairs file. I am currently trying to convert it to a .hic file. However, I keep running into this error where "allValidPairs.pre_juicebox_sorted does no…
-
Using the following configurations for HiCCUPS:
Config res: 5 peak: 5 window: 10 fdr: 10% radius: 30
WARNING - You are using the CPU version of HiCCUPS.
The GPU version of HiCCUPS is the official v…
-
this was on adam. The working directory was /HIC1000/CTCF_mutants_casellas/mES_ZF8/combined
command: /aidenlab/HiCTools/juicebox.sh hiccups -m 1000 -r 5000,10000,25000 -f 0.1,0.1,0.1 -p 4,2,1 -i 7,5,…
-
Hi,
I am running into the error below with hiccups. I am trying to reproduce some published data, which used defined settings with hiccups. I downloaded the pairsam file:
```
#columns: readID chr…