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I would like to use `canu v2.1.1` for assemble the 4 Gbp plant diploid genome. In the past I used `canu` with success. But now I get some error in assemble phase. I used `canu` under CentOS HPC enviro…
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Hello,
The building time for me seems to be much higher than the results in Table 5 of the paper. What value of k corresponds to the results in Table 5? I downloaded both the k=31 and k=63 human fi…
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canu command run:
```
canu -d assembly/R5_Diff -p R5_Diff -pacbio-hifi trimmed_reads/R5_Diff.fq useGrid=false genomeSize=3000000 maxInputCoverage=20000
```
output of canu -version:
```
can…
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I completed the canu tutorial for the ONT data with no problems. I then tried to use my own data by running the following command:
`/home/hh/canu/Linux-amd64/bin/canu \
-p HBV -d HBV-oxford \
…
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I am assembling a genome using Canu 2.2 with the following commands on a slurm cluster:
```
canu useGrid=false \
-p tf -d tf-pacbio \
genomeSize=164.4m \
-corrected \
corMhapSensitivity=norm…
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Hey!
I was trying to build a graph of 400K bacterial genomes and got the following error:
```
terminate called after throwing an instance of 'std::runtime_error'
what(): num_contigs must be l…
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**System:**
Linux AWS server (EC2 instance)
**Version:**
canu 2.2
**Command:**
`./canu -p 011_full -d 01_canu genomeSize=12m -trimmed -stopOnLowCoverage=0.001 -nanopore /home/ec2-user/01_full…
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version:
```
$ ghh | hh
* 091e224 - (HEAD -> fix3, origin/fix3) Algorithms are run on k-mers from all records. (27 minutes ago)
* b7696d5 - Merge branch 'fix2' into fix3 (58 minutes ago)
|\ …
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Hello,
Canu failed to build index for overlap store. See the log file below. Thanks for any help.
```
Found perl:
/usr/bin/perl
This is perl 5, version 26, subversion 3 (v5.26.3) bui…