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Thanks in advance for the support. I am trying to align approx. 90 mammal genomes on a slurm-enabled cluster. Running like this:
```
TOIL_SLURM_ARGS="--partition=macmanes --exclude=node116,node1…
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Hi,
Here is my command and it took almost 28 days to finish.
run-asm-pipeline.sh -m diploid -i 5000 --splitter-coarse-resolution 100000 --splitter-fine-resolution 1000 Perrie_HiC.asm.hic.p_ctg.…
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From Bob Harris:
`Maybe more detail in a sentence accompanying "Please log in to use this tool" would get a few users to the solution and cut down (a little) on problem posts.`
Example bug report de…
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LASTZ is fine here, see attached.
T2T CHM13 (20200727) chr6:30,495,643-30,690,096
[chr6:30495643-30690096.pdf](https://github.com/ComparativeGenomicsToolkit/cactus/files/5229619/chr6.30495643-306…
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Hi~everyone.
I have a question in lastz.
when l used my data for mapped read,there was this problem:
FAILURE: in load_2bit_sequence for /work/galaxy/data/hg38/seq/hg38.2bit, sequence length 2…
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This "error" is often encountered when the target and query have high rates of duplication that has not been masked.
```
FAILURE: in add_segment()
table size (4,869,542,152 for 101,448,794 segments…
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Does `last` have the ability to efficiently compute self-alignments? `lastz` has a mode specifically for this, but I was hoping to be able to replicate that more rapidly with `last`.
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@bgruening @abretaud
We should update the following to include GA in their .shed.yml:
- [x] interproscan
- [ ] all GGA tools
- [ ] maker / busco
- [x] augustus / glimmer / any other gene ca…
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I am trying to make my own marker file for humans (since the software does not provide the one used in the paper).
In step 1 I got the following error
Traceback (most recent call last):
File…
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Dear HaploMerger2 devoloper
I use falcon-unzip to assemble my genome and I obtained cns_h_ctg.fasta and cns_p_ctg.fasta,then I cat the two fasta file together. I use the merge fasta file to run Haplo…