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Our current approach for MS lesion detection/segmentation is to (i) segment the spina cord, (ii) crop it using the segmentation mask and (iii) use the cropped output for training a model.
However, …
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### Description
For debugging purposes, I want to check the centerline detected within the `sct_deepseg_lesion`. Since the centreline is not a standard output of this function, we used the flag `-r…
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**Describe the bug**
When Talairach registration fails a QA check, FreeSurfer will attempt to retry the registration with `target=3T18yoSchwartzReactN32_as_orig`. To allow for this, [fMRIPrep inclu…
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Hi,
I have tried running lesymap method 'regresfast' on a 100 subjects with 1 behavioural vector. I have tried using the following combinations:
# run a ULSM on GM roi
for (r in lesioned_gm_na…
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hi!
EDIT: The branch with the latest (corrected) centerlines is `ks/troubleshoot`. New branch was created due to a mix up. Future updates will only be this branch!
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Hello,
Thank you creating this software and for making it relatively easy to implement for a novice (took me a few tries to realized my GPU memory of 2GB was not sufficient to run fastsurfer with …
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In https://github.com/spinalcordtoolbox/spinalcordtoolbox/pull/3896, we began displaying statistics graphs from our "studies_citing_SCT" Google Sheets spreadsheet. For example:
![image](https://use…
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### Week 1 - Get to know the community
- [X] Join the communication channels
- [X] Open a GitHub issue (this one!)
- [x] Install the Ersilia Model Hub and test the simplest model
- [x] Write a motiva…
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### Project short name:
SingleCellPathologicalAngiogenesis
### Primary Wrangler:
Ami
### Secondary Wrangler:
Ida
### Associated files
* Google Drive:
https://drive.google.com/drive/folders/1K5…