-
`chr5 124734081 Minda_114 N . PASS SVLEN=164218;SVTYPE=DUP;SUPP_VEC=ILL_MantaDUP:TANDEM:104340:0:1:0:0:0,ILL_gridss100bf_5266h,PB_severus_DUP5863,ONT_severus_DUP6737,PB_ID_12396_2,ONT_ID_30440_2,ILL_…
jzook updated
3 weeks ago
-
`chr17 32305444 Minda_53 N N]chr17:32673230] . PASS SVLEN=367786;SVTYPE=BND;SUPP_VEC=PB_severus_INV2749,ONT_severus_INV3110,PB_ID_32705_2,PB_r_168_1,PB_Sniffles2.INV.1C7M10,ONT_ID_61071_2,ONT_r_103_1,…
jzook updated
3 weeks ago
-
I was wondering if it could make sense for `cnvkit` to add derived biomarkers such as HRD (integrating loss of heterozygosity (LOH), telomeric-allelic imbalance (TAI), and large-scale state transition…
-
Hello,
Thanks for the great tool! Excited to test it out.
I am working with a 10X Multiome Multiple Myeloma sample. I ran the pileup and phasing script in the Docker with no problems, and exported …
-
## Leftovers from the previous week
* [x] You are done with previous weeks work(:heavy_check_mark: well done!)
## Progress of this week
* [x] A version tagged `A-MoreOOP` is in the repo(:heavy_ch…
-
## Background and Motivation
There are several APIs that hardcode the 85K threshold to avoid landing data on the LOH (usually for ephemeral operations):
- https://github.com/dotnet/runtime/blob/…
-
Do so if you agree loh..
-
`chr3 182470122 Minda_98 N . PASS SVLEN=1425168;SVTYPE=DUP;SUPP_VEC=ILL_MantaDUP:TANDEM:72823:0:1:0:0:0,ILL_gridss67bf_7173h,PB_severus_BND4921_2,PB_ID_52984_2,ONT_severus_DUP5687,ILL_2492475892:2,PB…
jzook updated
1 month ago
-
`chr6 99729725 Minda_124 N . PASS SVLEN=148295;SVTYPE=DUP;SUPP_VEC=ILL_MantaDUP:TANDEM:118593:0:1:0:0:0,ILL_gridss116bf_1864h,PB_severus_DUP6270,ONT_severus_DUP7227,PB_r_300,ONT_ID_67259_2,ONT_r_198,…
jzook updated
1 month ago
-
We are currently using the purity facets result to annotate the maf, but I believe we should be using the hisens result instead. looks like the clinical impact runs are run using hisens, and for annot…