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Hi,
I'd like to ask if there's currently a way to write out a `Spectra` S4 object, probably initially read as `.mzML` or `.mzXML`, as `.h5`? There doesn't seem to be this capability from what I'm …
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Interesting project guys, thanks for sharing 👍We have sequenced a genome of a bacteria and we also have mass spec data for the proteome, wondering if this tool can be used to derive sequence of expect…
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Hi Vadim,
I have run some label free single cell samples on my timsTOF HT using slicePASEF. I have different cell amounts per run, as you can see from the file names. When I try to run this, it see…
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Attempting to extract data from mzXML file containing ms1 and ms2 scan (two total).
Read file in using mzR:
ms_file
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Hello, I'm working with a graduate student trying to use QCxMS on our HPC. We're on version 5.2.1. I'm working from the instructions found here:
https://xtb-docs.readthedocs.io/en/latest/qcxms_doc/…
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Hello
I am trying to run the pepquery web application and got this error
Error message: simpleWarning in system(javabin, intern = TRUE): running command 'java -Xmx50G -jar tool/pepquery.jar -c…
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Including (but not limited to), modified cosine score, neutral loss match score, and the updated cosine score.
This can be used very generally, and updated in the GUI, but was originally devised as…
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Hi Ming @mwang87 !
I, @lfnothias, and @hoseinmohimani have several requests & suggestions about updating [In Silico Tools](https://gnps.ucsd.edu/ProteoSAFe/static/gnps-theoretical.jsp) webpage. Some …
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An effective and efficient forward model is required for population-level stellar population inference. Let's start with a toy model.
The simplest case is only varying stellar mass and current SFR…
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# Abstract
Methods to represent multiple spectra
Spectral library searching offers a sensitive yet fast method to match spectra from mass spectrometry-based proteomics experiments. The techn…