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Transferred from https://github.com/ropensci/taxa/issues/210 for @emankhalaf
I have a feature table with taxonomy collapsed to the genus level, where the first column is the taxonomy (ranks se…
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When the dataframe is not arranged with all of one group in adjacent rows, the group labels in calc_n_samples are not in the proper order.
See example:
``` r
library(metacoder)
library(dplyr)…
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The travis-ci build [job](https://travis-ci.com/vallenderlab/MicrobiomeR/jobs/149276748) failed.
Could be due to:
- Too many dependencies for the app.
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## Developing advanced R tutorials for genomic data analysis
If you use R for genomic data analysis, then this project might be for you. How much of your advanced R knowledge was earned through ser…
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I can see you have done alpha-diversity assessment by using Inverse Simpson index, how could I assess the alpha-diversity by richness using Chao1 and ACE?
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Would be more convenient to return 0 for the whole column, even if `0/0 = Nan`
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Hi again,
first of all, this package is amazing!
I'm dealing with heat_tree_matrix on data obtained with calc_diff_abund_deseq2; what should I do on the diff_table in order to
keep in considerat…
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Hi,
I am trying to parse my phyloseq object to a taxmap object but I cant get it to work properly. The parsing seems to work fine (No error message) but when I look at the taxmap object it looks li…
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Hello,
I have been trying to upload and parse the data.
y
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Tools like FastQC generate an html report that summarizes the quality of a single sample, while tools like MultiQC summarize FastQC into one report that includes metrics for all samples. @ctb and I th…