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Hi,
I'm trying to set fsaverage_to_vol() to convert mgz files from HCP project, from fsaverage to MNI, the data samples are under this project (https://osf.io/bw9ec/), precisely inside the archive (…
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Hi,
I followed the spatial dm example but I keep getting errors when running spatialdm_local.
Below is the code I am running.
```
start = time.time()
sdm.spatialdm_local(adata, n_perm=1000, m…
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I mentioned to Dorota that it might be useful to implement an actual 'user' field that will return who ran each process. Locally, this is quite limited (e.g., my MacBook will return 'calir' as the cur…
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Hi,
Thank you for working on this amazing pipeline!
Our institution (MGH)'s cluster is based on lsf job submission, so that is the only option we have. However, when i was trying to run caper init l…
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I am using SBCI to process a batch of data. The pipeline has same error when processing a few subjects. The error may related to the surface calculation using vtk package. I am not sure if this error …
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I am trying to wrap https://surfer.nmr.mgh.harvard.edu/fswiki/mri_cvs_register
The command line is simple, "mri_cvs_register --mov subjID"
The problem is I do not completely know all the inputs used…
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## Feature Description
We would like to train and create a new sub-module to obtain from a T1 weighted image all 4 substructures of the Brain Stem (Pons, MidBrain, Medule, SCP)
...
## Motivation
…
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Hi Everyone,
I need to read various volumetric (subcortical) and morphometry stats from Freesurfer output (e.g. SUB/stats/aseg.stats)
https://surfer.nmr.mgh.harvard.edu/fswiki/MorphometryStats
…
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