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StatBiomed
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SpatialDM
Spatial direct messaging detected by bivariate Moran
https://spatialdm.readthedocs.io
Apache License 2.0
22
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InvalidIndexError when running sdm.extract_lr(adata, 'human', min_cell=3)
#30
Smilenone
opened
3 months ago
2
The process of 'Spatial Clustering of Local Spots' using SpatialDE is taking an excessive amount of time. Could I have overlooked some parameters?
#29
ABU-TO
opened
6 months ago
2
I keep getting error when running spatialdm_local AttributeError: 'NoneType' object has no attribute 'to_adata'
#28
smk5g5
opened
6 months ago
6
Load 10xgenomics Visium data using scanpy
#27
maiskovich
closed
8 months ago
0
Load 10xgenomics Visium data using scanpy
#26
maiskovich
closed
8 months ago
0
Bugs discovery for single-cell level spatialDM
#25
HelloWorldLTY
opened
8 months ago
5
time consuming about permutation!
#24
EddieLv
closed
12 months ago
0
reading in h5ad file
#23
anamaria-uofg
opened
1 year ago
1
Help with the simulations from the paper
#22
hiraksarkar
opened
1 year ago
2
Avoid 'np.float' Deprecation Error for numpy>=1.20
#21
yuifu
opened
1 year ago
0
Code Update Request: Avoid 'np.float' Deprecation Error in melanoma.ipynb
#20
yuifu
opened
1 year ago
6
api dataset
#19
leeyoyohku
closed
1 year ago
0
api dataset
#18
leeyoyohku
closed
1 year ago
0
Dev yoyo
#17
leeyoyohku
closed
1 year ago
0
api dataset
#16
leeyoyohku
closed
1 year ago
0
Dev yoyo
#15
leeyoyohku
closed
1 year ago
0
api dataset
#14
leeyoyohku
closed
1 year ago
0
api dataset
#13
leeyoyohku
closed
1 year ago
0
api dataset
#12
leeyoyohku
closed
1 year ago
0
api dataset
#11
leeyoyohku
closed
1 year ago
0
Dev yoyo
#10
leeyoyohku
closed
1 year ago
0
Support sparse X and weights
#9
huangyh09
closed
1 year ago
0
Support sparse X and weights
#8
huangyh09
closed
1 year ago
0
Update dev_yh branch from main
#7
huangyh09
closed
1 year ago
0
spatialdm_global does not work with a list of specified index, pair_selection_matrix would change adata
#6
wyq977
opened
1 year ago
1
weight_matrix with n_nearest_neighbors and n_neighbors
#5
wyq977
opened
1 year ago
1
positive mask commented out + other questions
#4
dbdimitrov
closed
1 year ago
3
Supp Note 1 and Example
#3
wyq977
closed
1 year ago
1
fix readthedocs badge
#2
wyq977
closed
1 year ago
0
support matrix-based global I
#1
huangyh09
closed
1 year ago
0