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Documenting this weird bug I ran into while working on microscopy files.
During the training/validation/testing steps, I get good results and predictions are visually OK. However, when trying to se…
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Hi Sir,
Z-stacking involves scanning a glass slide at different focal planes along the vertical z-axis and stacking the images on top of each other to produce a composite multiplane image.
Z-stack…
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For some microscope modalities one collects 2D images, but it can make sense to still assign them a physical thickness along axis perpendicular to the 2D plane, e.g the axial extend of the PSF in ligh…
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@manerotoni
I had now several users that wanted to measure shapes (e.g. volume) of objects that are at least in one dimension close to the diffraction limit.
I think it would be very important …
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I trained the nuclei images from the Segmenting Nuclei in Microscopy Images project, both network heads and all layers, with 10 epochs for each (20 total), using the mask_rcnn_coco.h5 weight file as t…
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Hi, first of all, many thanks for maintaining this library and in particular this port to C++.
I'm starting to write a library for scientific image processing (Electron Microscopy images) and I wa…
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https://arxiv.org/abs/1708.04692
> In this paper, we propose a novel application of Generative Adversarial Networks (GAN) to the synthesis of cells imaged by fluorescence microscopy. Compared to na…
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Hi,
I have some very noisy microscopy images of the neurons that i'd like to denoise. I am interested in using your plugin for the same. I have installed N2V in Fiji alongwith the tensorflow updates.…
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Hi,
first of all, thank you for this great piece of software!
It works good for most of my fluorescence microscopy images, but in some cases it fails to align the images of my z-stack properly. For …
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When I was looking around for the specification/documentation of the msa format, I found this pure python package, which implement reading/writing MSA / MAS / AMAS Hyper-Dimensional data files. Althou…