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Hello!
I've been trying to identify the onset time of septic shock of the patients in MIMIC III Database, but I couldn't find a way to do that. Could you help me with that?
Thank you very much
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I am trying to run the mimic-III pretrained BERT model with the ClinicalTransformerNER package but the package file run_tranformer_batch_prediction.py requires a file named label2idx.json, which is no…
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### Prerequisites
* [X] Put an X between the brackets on this line if you have done all of the following:
* Checked the online documentation: https://mimic.physionet.org/about/mimic/
* Ch…
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I am running FIDDLE on data extracted from MIMIC-III using the pipeline outlined in [FIDDLE-experiments](https://github.com/MLD3/FIDDLE-experiments/tree/master/mimic3_experiments). I have my populatio…
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`Neto, Ary S.*, Rodrigo O. Deliberato*, Alistair E. W. Johnson*, Lieuwe D. Bos*, Pedro Amorim, Silvio Moreto Pereira, Denise Carnieli Cazati et al. "Mechanical power of ventilation is associated with …
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I use the data extraction process to get the MIMIC-Ⅲ dataset which contains 53,211 records. I use the given code to split the train, valid and test set. And I use the hyperparameters given to run mTAN…
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"Step 2: Prepare the training data
Download the MIMIC-III data, aggregate the medical codes (e.g. diagonsis codes, medication codes, or procedure codes) for each patient, and save them as an numpy da…
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I am wondering if you could share the top 50 ICD codes used in your work? Did you use DIAGNOSES_ICD to extract ICD codes? I looked into CAML_mimic3_50/preds_test.psv and found some codes, such as 37.2…
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I apologize, I know this has been posed as an issue before. But does anyone have code in R for extracting/calculating SOFA Score from the eICU database (I've found SQL code but not R). Or does anyone …
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