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Hello,
Thank you for this tool. I have 5' 10x Library sequenced with Nanopore Sequencing. I previously used JAFFAL to recover known fusion from Single-Cell which works quite well and I wanted to use…
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How do you feel about a default OptimResult return type for all minimizers? I was thinking about a struct that contains:
* information about termination reason,
* runtime,
* number of function e…
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Hello Grace,
I am classifying reads from a few projects. I worked great while the other two failed.
1. Case 1 - Sequenced strain is not in database resulted in the following error:
Group 6
nar…
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Hi!when I run the code`minimap2 -ax splice -uf --secondary=no -C5 -t 30 --MD /data/work/SRR17180608_subreads.fastq /data/work/GRCh38.primary_assembly.genome.fa`,then comes
`[M::mm_idx_gen::13.850*1.8…
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As already discussed with @pelssers, I would propose you for the long term to make use of [zfit](https://github.com/zfit/zfit), which contains API and workflow definitions for model fitting including …
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I'm trying to fit a point distribution to a cone shape. I use `ectopylasm` for this (can be [`pip install`ed as described in the README](https://github.com/sundial-pointcloud-geometry/ectopylasm#insta…
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Hello.
Is there any limit to the length of chromosomes in chromap?
I'm working on an contact map for genomes with chromosomes greater than 2GB, and some other alignment tools seem to have length…
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Hi,
I have met with another ignoring error, here is the log:
0.982908 k-mers per position
14994 DB matches per sequence
8 overflows
0 queries produce too many hits (truncated result)
58 sequen…
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Hello,
i have ann issue with an empty output after polishing with racon. When i run racon on an assembly and a polishing file i get a empty output although it seems like the tool finishes without an…
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Hi, I runned all the script in the README.md using the GLORI data, and failed to get the bed file in the output directory at last.
Here is the log:
Running RODAN basecaller
500 reads processed
…